CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91803
KRH34983
KRH34984

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G20890.1	KRG91803	AT1G35670.1	19130088
AT2G20890.1	KRH34983	AT1G35670.1	19130088
AT2G20890.1	KRH34984	AT1G35670.1	19130088
AT2G20890.1	KRG91803	AT4G09570.1	19130088
AT2G20890.1	KRH34983	AT4G09570.1	19130088
AT2G20890.1	KRH34984	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22464	Soybean	nucleus, plastid	96.97	96.97
KRH56048	Soybean	nucleus, plastid	76.43	78.01
KRH25480	Soybean	nucleus, plastid	75.76	77.32
VIT_12s0057g00020.t01	Wine grape	plastid	77.44	76.92
Bra031147.1-P	Field mustard	plastid	70.71	70.95
CDY13852	Canola	plastid	70.71	70.95
CDX81988	Canola	plastid	70.37	70.85
GSMUA_Achr9P12190_001	Banana	plastid	67.68	70.53
PGSC0003DMT400047218	Potato	cytosol, extracellular, plastid	69.36	70.31
GSMUA_Achr8P03730_001	Banana	plastid	65.66	67.94
Os07t0558500-01	Rice	plastid	65.32	67.6
EER99538	Sorghum	plastid	64.31	67.25
AT2G20890.1	Thale cress	plastid	67.68	67.0
Zm00001d006588_P001	Maize	plastid	63.3	66.2
TraesCS2A01G206100.1	Wheat	mitochondrion, plastid	63.64	66.08
TraesCS2B01G233300.1	Wheat	plastid	63.64	66.08
HORVU2Hr1G041260.1	Barley	mitochondrion, plastid	63.3	65.73
TraesCS2D01G210000.1	Wheat	plastid	63.3	65.73
Solyc07g054820.2.1	Tomato	plastid	52.86	62.8
Zm00001d021764_P002	Maize	plastid	52.86	51.99
KRH13607	Soybean	cytosol	11.11	44.0

Protein Annotations

EMBL:ACUP02007755	EnsemblPlants:KRH26888	EnsemblPlantsGene:GLYMA_12G200200	EntrezGene:100814341	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010207	GO:GO:0015979	GO:GO:0016043	HAMAP:MF_01843
InterPro:Thf1	ncoils:Coil	PANTHER:PTHR34793	PANTHER:PTHR34793:SF5	PFAM:PF11264	ProteinID:KRH26888
ProteinID:KRH26888.1	TIGRFAMs:TIGR03060	UniParc:UPI000233C443	UniProt:I1LUC3	MapMan:1.1.1.3.10	:

Description

hypothetical protein

Coordinates

chr12:-:36149255..36152904

Molecular Weight (calculated)

33832.6 Da

IEP (calculated)

8.763

GRAVY (calculated)

-0.341

Length

297 amino acids

Sequence
(BLAST)

001: MAALTSLSFS AVTHCSERKV TLSSTRFLAS SSEIFGFRTD FSYHYVGVRA SNSPSKMVVQ CMSSATDVPP TVSETKLNFL KAYKRPIPSI YNTVLQELIV
101: QQHLMKYKRS YRYDPVFALG FVTIYDKLME GYPSDEDRDA IFQAYIKALK EDPEQYRIDA RKLEEWARVQ KPTSLVEFSS KEGEVEGILK DIAERAGGKG
201: EFSYSRFFAV GLFRLLELAN ATEPTILDKL CVALNINKRS VDRDLDVYRI LLSKLVQAKE LLKEYIDREK KKRDERAEPQ KANEAITTCL GQQLPGL

Best Arabidopsis Sequence Match ( AT2G20890.1 )
(BLAST)

001: MAATAISSLS FPALGQSDKI SNFASSRPLA SAIRICTKFS RLSLNSRSTS KSLIHCMSNV TADVPPVSET KSKFLKAYKR PIPSIYNTVL QELIVQQHLM
101: RYKKTYRYDP VFALGFVTVY DQLMEGYPSD QDRDAIFKAY IEALNEDPKQ YRIDAQKMEE WARSQTSASL VDFSSKEGDI EAVLKDIAGR AGSKEGFSYS
201: RFFAVGLFRL LELASATDPT VLDKLCASLN INKKSVDRDL DVYRNLLSKL VQAKELLKEY VEREKKKQGE RAQSQKANET ISKCLGDTLY NPSFLVERKS

Arabidopsis Description

THF1THF1 [Source:UniProtKB/TrEMBL;Acc:A0A178VVV5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.