Factsheet for Os07t0558500-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

plastid: 17189339
plastid: 21433289

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os11t0171500-01
Os12t0169800-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G20890.1	Os11t0171500-01	AT1G35670.1	19130088
AT2G20890.1	Os12t0169800-00	AT1G35670.1	19130088
AT2G20890.1	Os11t0171500-01	AT4G09570.1	19130088
AT2G20890.1	Os12t0169800-00	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G233300.1	Wheat	plastid	86.76	87.06
HORVU2Hr1G041260.1	Barley	mitochondrion, plastid	86.76	87.06
TraesCS2A01G206100.1	Wheat	mitochondrion, plastid	86.76	87.06
EER99538	Sorghum	plastid	85.71	86.62
TraesCS2D01G210000.1	Wheat	plastid	86.06	86.36
Zm00001d006588_P001	Maize	plastid	85.02	85.92
GSMUA_Achr9P12190_001	Banana	plastid	72.13	72.63
GSMUA_Achr8P03730_001	Banana	plastid	70.73	70.73
KRH25480	Soybean	nucleus, plastid	67.94	67.01
Zm00001d021764_P002	Maize	plastid	70.03	66.56
VIT_12s0057g00020.t01	Wine grape	plastid	68.64	65.89
KRH56048	Soybean	nucleus, plastid	66.55	65.64
CDY13852	Canola	plastid	67.6	65.54
Bra031147.1-P	Field mustard	plastid	67.6	65.54
PGSC0003DMT400047218	Potato	cytosol, extracellular, plastid	66.9	65.53
KRH22464	Soybean	nucleus, plastid	67.6	65.32
KRH26888	Soybean	nucleus, plastid	67.6	65.32
CDX81988	Canola	plastid	66.55	64.75
AT2G20890.1	Thale cress	plastid	65.85	63.0
Solyc07g054820.2.1	Tomato	plastid	49.48	56.8
KRH13607	Soybean	cytosol	11.15	42.67

Protein Annotations

MapMan:1.1.1.3.10	EntrezGene:4343584	EMBL:AK064914	EMBL:AY224446	ProteinID:BAC84034.1	ProteinID:BAF21890.1
ProteinID:BAT02123.1	ncoils:Coil	ProteinID:EAZ40280.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006091	GO:GO:0006810	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009507	GO:GO:0009527
GO:GO:0009528	GO:GO:0009532	GO:GO:0009534	GO:GO:0009535	GO:GO:0009536	GO:GO:0009570
GO:GO:0009579	GO:GO:0009628	GO:GO:0009707	GO:GO:0009941	GO:GO:0009987	GO:GO:0010027
GO:GO:0010182	GO:GO:0010207	GO:GO:0010319	GO:GO:0015979	GO:GO:0015996	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0045037	GO:GO:0045038	GO:GO:1902458	GO:GO:1903426
GO:GO:2000070	HAMAP:MF_01843	EnsemblPlantsGene:Os07g0558500	EnsemblPlants:Os07t0558500-01	PFAM:PF11264	PANTHER:PTHR34793
PANTHER:PTHR34793:SF1	UniProt:Q84PB7	TIGRFAMs:TIGR03060	InterPro:Thf1	UniParc:UPI000005F8AF	RefSeq:XP_015646911.1
SEG:seg	:	:	:	:	:

Description

NON-YELLOW COLORING4Inositol phosphatase-like protein. (Os07t0558500-01);Similar to Protein THYLAKOID FORMATION1, chloroplastic. (Os07t0558500-02)

Coordinates

chr7:-:22319163..22323151

Molecular Weight (calculated)

32101.3 Da

IEP (calculated)

9.177

GRAVY (calculated)

-0.369

Length

287 amino acids

Sequence
(BLAST)

001: MAAISSLPFA ALRRAADCRP STAAAAAGAG AGAVVLSVRP RRGSRSVVRC VATAGDVPPT VAETKMNFLK SYKRPILSIY STVLQELLVQ QHLMRYKTTY
101: QYDAVFALGF VTVYDQLMEG YPSNEDRDAI FKAYITALNE DPEQYRADAQ KMEEWARSQN GNSLVEFSSK DGEIEAILKD ISERAQGKGS FSYSRFFAVG
201: LFRLLELANA TEPTILDKLC AALNINKRSV DRDLDVYRNI LSKLVQAKEL LKEYVEREKK KREERSETPK SNEAVTKFDG SLNSMRH

Best Arabidopsis Sequence Match ( AT2G20890.1 )
(BLAST)

001: MAATAISSLS FPALGQSDKI SNFASSRPLA SAIRICTKFS RLSLNSRSTS KSLIHCMSNV TADVPPVSET KSKFLKAYKR PIPSIYNTVL QELIVQQHLM
101: RYKKTYRYDP VFALGFVTVY DQLMEGYPSD QDRDAIFKAY IEALNEDPKQ YRIDAQKMEE WARSQTSASL VDFSSKEGDI EAVLKDIAGR AGSKEGFSYS
201: RFFAVGLFRL LELASATDPT VLDKLCASLN INKKSVDRDL DVYRNLLSKL VQAKELLKEY VEREKKKQGE RAQSQKANET ISKCLGDTLY NPSFLVERKS

Arabidopsis Description

THF1THF1 [Source:UniProtKB/TrEMBL;Acc:A0A178VVV5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.