Factsheet for Zm00001d021764_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004812_P002
Zm00001d023560_P002
Zm00001d053016_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G20890.1	Zm00001d004812_P002	AT1G35670.1	19130088
AT2G20890.1	Zm00001d023560_P002	AT1G35670.1	19130088
AT2G20890.1	Zm00001d053016_P002	AT1G35670.1	19130088
AT2G20890.1	Zm00001d004812_P002	AT4G09570.1	19130088
AT2G20890.1	Zm00001d023560_P002	AT4G09570.1	19130088
AT2G20890.1	Zm00001d053016_P002	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d006588_P001	Maize	plastid	69.54	73.94
Os07t0558500-01	Rice	plastid	66.56	70.03
TraesCS2B01G233300.1	Wheat	plastid	64.24	67.83
TraesCS2A01G206100.1	Wheat	mitochondrion, plastid	64.24	67.83
TraesCS2D01G210000.1	Wheat	plastid	63.91	67.48
HORVU2Hr1G041260.1	Barley	mitochondrion, plastid	63.91	67.48
GSMUA_Achr9P12190_001	Banana	plastid	53.31	56.49
GSMUA_Achr8P03730_001	Banana	plastid	51.99	54.7
Solyc07g054820.2.1	Tomato	plastid	45.03	54.4
KRH56048	Soybean	nucleus, plastid	50.99	52.92
KRH26888	Soybean	nucleus, plastid	51.99	52.86
CDY13852	Canola	plastid	51.66	52.7
Bra031147.1-P	Field mustard	plastid	51.66	52.7
KRH22464	Soybean	nucleus, plastid	51.66	52.53
KRH25480	Soybean	nucleus, plastid	50.33	52.23
CDX81988	Canola	plastid	50.99	52.2
VIT_12s0057g00020.t01	Wine grape	plastid	50.66	51.17
AT2G20890.1	Thale cress	plastid	50.66	51.0
PGSC0003DMT400047218	Potato	cytosol, extracellular, plastid	49.01	50.51
KRH13607	Soybean	cytosol	10.26	41.33

Protein Annotations

EnsemblPlants:Zm00001d021764_P002	EnsemblPlants:Zm00001d021764_T002	EnsemblPlantsGene:Zm00001d021764	EntrezGene:100193314	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010207	GO:GO:0015979	GO:GO:0016043	InterPro:Thf1
PANTHER:PTHR34793	PANTHER:PTHR34793:SF1	PFAM:PF11264	ProteinID:ONM58302.1	SEG:seg	UniParc:UPI0008442A96
UniProt:A0A1D6IF49	MapMan:1.1.1.3.10	:	:	:	:

Description

Protein THYLAKOID FORMATION 1 chloroplastic

Coordinates

chr7:-:162638409..162642926

Molecular Weight (calculated)

34384.4 Da

IEP (calculated)

10.518

GRAVY (calculated)

-0.310

Length

302 amino acids

Sequence
(BLAST)

001: MAAISSLPFA ALRGAAEWRP SSTAAAVSGA VVLSARSRRG SRSVVRCVAT TGDVPPTVAE TKLNFLKSYK RPIPSIYSAV LQELLVQQHL MRYKKTYQYD
101: AVFALGFVTV YDQLMEGYPS NEDRDSIFKA YITALNEDPD QYRADALKME EWARSQNGSS LVDFSSRDGE IEAILKDISE RAKGKGNFSY SRFFAVGLFR
201: LLELSNATEP TILDKVVPSL INLFLPFLSC GKRRREKKDR KPRSRTKLSQ NLMETFIPQG IRISPLQRRV SQDNRINSNI WTVLRNHQMF PFHHRRLWLL
301: VL

Best Arabidopsis Sequence Match ( AT2G20890.1 )
(BLAST)

001: MAATAISSLS FPALGQSDKI SNFASSRPLA SAIRICTKFS RLSLNSRSTS KSLIHCMSNV TADVPPVSET KSKFLKAYKR PIPSIYNTVL QELIVQQHLM
101: RYKKTYRYDP VFALGFVTVY DQLMEGYPSD QDRDAIFKAY IEALNEDPKQ YRIDAQKMEE WARSQTSASL VDFSSKEGDI EAVLKDIAGR AGSKEGFSYS
201: RFFAVGLFRL LELASATDPT VLDKLCASLN INKKSVDRDL DVYRNLLSKL VQAKELLKEY VEREKKKQGE RAQSQKANET ISKCLGDTLY NPSFLVERKS

Arabidopsis Description

THF1THF1 [Source:UniProtKB/TrEMBL;Acc:A0A178VVV5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.