Factsheet for Zm00001d006588_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004812_P002
Zm00001d023560_P002
Zm00001d053016_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G20890.1	Zm00001d004812_P002	AT1G35670.1	19130088
AT2G20890.1	Zm00001d023560_P002	AT1G35670.1	19130088
AT2G20890.1	Zm00001d053016_P002	AT1G35670.1	19130088
AT2G20890.1	Zm00001d004812_P002	AT4G09570.1	19130088
AT2G20890.1	Zm00001d023560_P002	AT4G09570.1	19130088
AT2G20890.1	Zm00001d053016_P002	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99538	Sorghum	plastid	93.31	93.31
Os07t0558500-01	Rice	plastid	85.92	85.02
TraesCS2B01G233300.1	Wheat	plastid	82.75	82.17
TraesCS2A01G206100.1	Wheat	mitochondrion, plastid	82.75	82.17
TraesCS2D01G210000.1	Wheat	plastid	82.39	81.82
HORVU2Hr1G041260.1	Barley	mitochondrion, plastid	82.39	81.82
GSMUA_Achr9P12190_001	Banana	plastid	72.18	71.93
GSMUA_Achr8P03730_001	Banana	plastid	71.13	70.38
Zm00001d021764_P002	Maize	plastid	73.94	69.54
KRH56048	Soybean	nucleus, plastid	66.9	65.29
KRH25480	Soybean	nucleus, plastid	66.55	64.95
CDY13852	Canola	plastid	66.55	63.85
Bra031147.1-P	Field mustard	plastid	66.55	63.85
CDX81988	Canola	plastid	65.85	63.39
KRH26888	Soybean	nucleus, plastid	66.2	63.3
KRH22464	Soybean	nucleus, plastid	66.2	63.3
VIT_12s0057g00020.t01	Wine grape	plastid	66.55	63.21
PGSC0003DMT400047218	Potato	cytosol, extracellular, plastid	63.73	61.77
AT2G20890.1	Thale cress	plastid	63.73	60.33
Solyc07g054820.2.1	Tomato	plastid	47.18	53.6
KRH13607	Soybean	cytosol	11.27	42.67

Protein Annotations

MapMan:1.1.1.3.10	EntrezGene:100382672	EMBL:BT065021	UniProt:C0P9Q2	ncoils:Coil	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010207	GO:GO:0015979	GO:GO:0016043
HAMAP:MF_01843	ProteinID:ONM24321.1	PFAM:PF11264	PANTHER:PTHR34793	PANTHER:PTHR34793:SF1	TIGRFAMs:TIGR03060
InterPro:Thf1	UniParc:UPI000194B251	EnsemblPlantsGene:Zm00001d006588	EnsemblPlants:Zm00001d006588_P001	EnsemblPlants:Zm00001d006588_T001	SEG:seg

Description

Protein THYLAKOID FORMATION 1 chloroplastic

Coordinates

chr2:-:211696638..211701283

Molecular Weight (calculated)

31925.0 Da

IEP (calculated)

9.595

GRAVY (calculated)

-0.397

Length

284 amino acids

Sequence
(BLAST)

001: MASISSLPFA PLRGAAEWRP SSTAPAVSGA VVLSARSRRG SGSVVRCVAT ASDVPPTVGE TKLNFLKSYK RPIPSIYSTV LQELLVQQHL MRYKRTYQYD
101: AVFALGFVTV YDQLMEGYPS IEDRDSIFKA YITALNEDPN QYRADALKME GWARSQNGSS LVDFSSRDGE IESILKDISE RAKGKGNFSY SRFFAVGLFR
201: LLELANATEP TVLDKLCAAL NINKRSVDRD LDVYRNILSK LVQAKELLKE YVDREKKKRE ERSETPKPNE AVTKFDGNLY SIRH

Best Arabidopsis Sequence Match ( AT2G20890.1 )
(BLAST)

001: MAATAISSLS FPALGQSDKI SNFASSRPLA SAIRICTKFS RLSLNSRSTS KSLIHCMSNV TADVPPVSET KSKFLKAYKR PIPSIYNTVL QELIVQQHLM
101: RYKKTYRYDP VFALGFVTVY DQLMEGYPSD QDRDAIFKAY IEALNEDPKQ YRIDAQKMEE WARSQTSASL VDFSSKEGDI EAVLKDIAGR AGSKEGFSYS
201: RFFAVGLFRL LELASATDPT VLDKLCASLN INKKSVDRDL DVYRNLLSKL VQAKELLKEY VEREKKKQGE RAQSQKANET ISKCLGDTLY NPSFLVERKS

Arabidopsis Description

THF1THF1 [Source:UniProtKB/TrEMBL;Acc:A0A178VVV5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.