CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73342
CDX90725
CDY05064
CDY37101

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G20890.1	CDX73342	AT1G35670.1	19130088
AT2G20890.1	CDY37101	AT1G35670.1	19130088
AT2G20890.1	CDX90725	AT4G09570.1	19130088
AT2G20890.1	CDY05064	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13852	Canola	plastid	95.93	95.61
AT2G20890.1	Thale cress	plastid	82.71	81.33
KRH26888	Soybean	nucleus, plastid	70.85	70.37
VIT_12s0057g00020.t01	Wine grape	plastid	71.19	70.23
KRH22464	Soybean	nucleus, plastid	69.83	69.36
KRH56048	Soybean	nucleus, plastid	67.8	68.73
KRH25480	Soybean	nucleus, plastid	67.8	68.73
HORVU2Hr1G041260.1	Barley	mitochondrion, plastid	64.75	66.78
PGSC0003DMT400047218	Potato	cytosol, extracellular, plastid	66.1	66.55
Os07t0558500-01	Rice	plastid	64.75	66.55
EER99538	Sorghum	plastid	64.07	66.55
TraesCS2A01G206100.1	Wheat	mitochondrion, plastid	64.41	66.43
TraesCS2B01G233300.1	Wheat	plastid	64.41	66.43
GSMUA_Achr9P12190_001	Banana	plastid	64.07	66.32
TraesCS2D01G210000.1	Wheat	plastid	64.07	66.08
Zm00001d006588_P001	Maize	plastid	63.39	65.85
GSMUA_Achr8P03730_001	Banana	plastid	60.34	62.02
Solyc07g054820.2.1	Tomato	plastid	48.81	57.6
Zm00001d021764_P002	Maize	plastid	52.2	50.99
KRH13607	Soybean	cytosol	9.15	36.0

Protein Annotations

EnsemblPlants:CDX81988	EnsemblPlantsGene:GSBRNA2T00136963001	GO:A0A078D3X6	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0010207	GO:GO:0015979	GO:GO:0016043	HAMAP:MF_01843	InterPro:Thf1
ncoils:Coil	PANTHER:PTHR34793	PANTHER:PTHR34793:SF5	PFAM:PF11264	ProteinID:CDX81988	ProteinID:CDX81988.1
SEG:seg	TIGRFAMs:TIGR03060	UniParc:UPI0004EF1E7D	MapMan:1.1.1.3.10	:	:

Description

BnaC08g36130D

Coordinates

chrLK031826:+:1793408..1794899

Molecular Weight (calculated)

33167.6 Da

IEP (calculated)

9.360

GRAVY (calculated)

-0.401

Length

295 amino acids

Sequence
(BLAST)

001: MAAIASLSFP ALGQSGKISN PTPCRPLASV SAICRRLSRR SLTSSRPSTS SPKFVIHCMS SVTDVPPVSE TKSNFLKAYK RPIPSIYNTV LQELIVQQHL
101: MRYKRTYRYD PVFALGFVTV YDQLMDGYPS DQDRDSIFQA YVEALNEDPK QYRIDAQKME EWARSQTSAS LVDFSSKEGE VEAILKDISE RAGSKEGFSY
201: SRFFAVGLFR LLELAGATDP TVLDKLCASL NINKKSVDRD LDVYRNLLSK LVQAKELLKE YVEREKKKRG ERAESQKANE SISKSLGDNS LSFLV

Best Arabidopsis Sequence Match ( AT2G20890.1 )
(BLAST)

001: MAATAISSLS FPALGQSDKI SNFASSRPLA SAIRICTKFS RLSLNSRSTS KSLIHCMSNV TADVPPVSET KSKFLKAYKR PIPSIYNTVL QELIVQQHLM
101: RYKKTYRYDP VFALGFVTVY DQLMEGYPSD QDRDAIFKAY IEALNEDPKQ YRIDAQKMEE WARSQTSASL VDFSSKEGDI EAVLKDIAGR AGSKEGFSYS
201: RFFAVGLFRL LELASATDPT VLDKLCASLN INKKSVDRDL DVYRNLLSKL VQAKELLKEY VEREKKKQGE RAQSQKANET ISKCLGDTLY NPSFLVERKS

Arabidopsis Description

THF1THF1 [Source:UniProtKB/TrEMBL;Acc:A0A178VVV5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.