CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91803
KRH34983
KRH34984

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G20890.1	KRG91803	AT1G35670.1	19130088
AT2G20890.1	KRH34983	AT1G35670.1	19130088
AT2G20890.1	KRH34984	AT1G35670.1	19130088
AT2G20890.1	KRG91803	AT4G09570.1	19130088
AT2G20890.1	KRH34983	AT4G09570.1	19130088
AT2G20890.1	KRH34984	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH25480	Soybean	nucleus, plastid	93.81	93.81
KRH26888	Soybean	nucleus, plastid	78.01	76.43
KRH22464	Soybean	nucleus, plastid	77.32	75.76
GSMUA_Achr9P12190_001	Banana	plastid	71.13	72.63
VIT_12s0057g00020.t01	Wine grape	plastid	74.57	72.58
PGSC0003DMT400047218	Potato	cytosol, extracellular, plastid	69.42	68.94
GSMUA_Achr8P03730_001	Banana	plastid	67.01	67.94
CDX81988	Canola	plastid	68.73	67.8
Bra031147.1-P	Field mustard	plastid	68.38	67.23
CDY13852	Canola	plastid	68.38	67.23
Zm00001d006588_P001	Maize	plastid	65.29	66.9
Os07t0558500-01	Rice	plastid	65.64	66.55
EER99538	Sorghum	plastid	64.95	66.55
HORVU2Hr1G041260.1	Barley	mitochondrion, plastid	62.89	63.99
TraesCS2A01G206100.1	Wheat	mitochondrion, plastid	62.89	63.99
TraesCS2B01G233300.1	Wheat	plastid	62.89	63.99
TraesCS2D01G210000.1	Wheat	plastid	62.54	63.64
AT2G20890.1	Thale cress	plastid	64.6	62.67
Solyc07g054820.2.1	Tomato	plastid	53.26	62.0
Zm00001d021764_P002	Maize	plastid	52.92	50.99
KRH13607	Soybean	cytosol	9.97	38.67

Protein Annotations

MapMan:1.1.1.3.10	EntrezGene:100779964	EMBL:ACUP02004088	ncoils:Coil	EnsemblPlantsGene:GLYMA_06G299100	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010207	GO:GO:0015979	GO:GO:0016043
UniProt:I1KF75	EnsemblPlants:KRH56048	ProteinID:KRH56048	ProteinID:KRH56048.1	HAMAP:MF_01843	PFAM:PF11264
PANTHER:PTHR34793	PANTHER:PTHR34793:SF5	TIGRFAMs:TIGR03060	InterPro:Thf1	UniParc:UPI000233A606	SEG:seg

Description

hypothetical protein

Coordinates

chr6:+:48765303..48769347

Molecular Weight (calculated)

33135.4 Da

IEP (calculated)

8.691

GRAVY (calculated)

-0.429

Length

291 amino acids

Sequence
(BLAST)

001: MATVTSSFSF STLTQSSSPR NLSTLSSNSP TFRIRVGFSC HYVGVRASNS ASKIVVRCSS AVAEPPTVSE TKLNFLKAYK RPIPSIYNTV LQELIVQQHL
101: MRYKRSYRYD AVFALGFVTV YEQLMEGYPS DEDRDAIFQA YIQALKEDPE QYRVDAKKLE EWARAQNPTS LVDFSSREGE VEGILKDIAE RAGGKGDFSY
201: SRFFAIGLFR LLELANAMEP TILEKLCAVL NVDKRSVDRD LDVYRNLLSK LVQAKELLKE YVDREKKKRE ERAEPQKSNE AITQQQQFSS L

Best Arabidopsis Sequence Match ( AT2G20890.1 )
(BLAST)

001: MAATAISSLS FPALGQSDKI SNFASSRPLA SAIRICTKFS RLSLNSRSTS KSLIHCMSNV TADVPPVSET KSKFLKAYKR PIPSIYNTVL QELIVQQHLM
101: RYKKTYRYDP VFALGFVTVY DQLMEGYPSD QDRDAIFKAY IEALNEDPKQ YRIDAQKMEE WARSQTSASL VDFSSKEGDI EAVLKDIAGR AGSKEGFSYS
201: RFFAVGLFRL LELASATDPT VLDKLCASLN INKKSVDRDL DVYRNLLSKL VQAKELLKEY VEREKKKQGE RAQSQKANET ISKCLGDTLY NPSFLVERKS

Arabidopsis Description

THF1THF1 [Source:UniProtKB/TrEMBL;Acc:A0A178VVV5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.