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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, extracellular, cytosol

Predictor Summary:
  • plastid 10
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, extracellular, plastid
Any Predictor:plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:plastid
Plant-mPloc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
 cytosol: 22313117
extracellular: 28248230
msms PMID: 28248230 doi
E Elagamey, K Narula, A Sinha, PR Aggarwal, S Ghosh, N Chakraborty, S Chakraborty
National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. aggarwal.pooja28@yahoo.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. arunima35@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. gayatrinarula@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. nchakraborty@nipgr.ac.in., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. schakraborty@nipgr.ac.in., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. sgblackpearl@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. subhrac@hotmail.com.
msms PMID: 22313117 doi
S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto
Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400002331
PGSC0003DMT400067082

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G20890.1 PGSC0003DMT400002331 AT1G35670.1 19130088
AT2G20890.1 PGSC0003DMT400067082 AT1G35670.1 19130088
AT2G20890.1 PGSC0003DMT400002331 AT4G09570.1 19130088
AT2G20890.1 PGSC0003DMT400067082 AT4G09570.1 19130088
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc07g054820.2.1 Tomato plastid 77.13 90.4
VIT_12s0057g00020.t01 Wine grape plastid 70.99 69.57
KRH56048 Soybean nucleus, plastid 68.94 69.42
KRH22464 Soybean nucleus, plastid 70.31 69.36
KRH26888 Soybean nucleus, plastid 70.31 69.36
KRH25480 Soybean nucleus, plastid 68.26 68.73
Os07t0558500-01 Rice plastid 65.53 66.9
HORVU2Hr1G041260.1 Barley mitochondrion, plastid 65.19 66.78
GSMUA_Achr9P12190_001 Banana plastid 64.85 66.67
TraesCS2B01G233300.1 Wheat plastid 64.85 66.43
TraesCS2A01G206100.1 Wheat mitochondrion, plastid 64.85 66.43
Bra031147.1-P Field mustard plastid 66.89 66.22
CDY13852 Canola plastid 66.89 66.22
CDX81988 Canola plastid 66.55 66.1
TraesCS2D01G210000.1 Wheat plastid 64.51 66.08
AT2G20890.1 Thale cress plastid 67.24 65.67
EER99538 Sorghum plastid 62.46 64.44
Zm00001d006588_P001 Maize plastid 61.77 63.73
GSMUA_Achr8P03730_001 Banana plastid 61.77 63.07
Zm00001d021764_P002 Maize plastid 50.51 49.01
KRH13607 Soybean cytosol 9.22 36.0
Protein Annotations
MapMan:1.1.1.3.10ProteinID:AAQ19850ProteinID:AAQ19850.1EMBL:AY342161ncoils:CoilGO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0006091GO:GO:0006810GO:GO:0006950
GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0008152GO:GO:0009056GO:GO:0009058
GO:GO:0009507GO:GO:0009527GO:GO:0009528GO:GO:0009532GO:GO:0009534GO:GO:0009535
GO:GO:0009536GO:GO:0009570GO:GO:0009579GO:GO:0009628GO:GO:0009707GO:GO:0009941
GO:GO:0009987GO:GO:0010027GO:GO:0010182GO:GO:0010207GO:GO:0010319GO:GO:0015979
GO:GO:0015996GO:GO:0016020GO:GO:0016021GO:GO:0016043GO:GO:0045037GO:GO:0045038
GO:GO:1902458GO:GO:1903426GO:GO:2000070UniProt:M1BKB1HAMAP:MF_01843PFAM:PF11264
EnsemblPlantsGene:PGSC0003DMG400018330PGSC:PGSC0003DMG400018330EnsemblPlants:PGSC0003DMT400047218PANTHER:PTHR34793PANTHER:PTHR34793:SF5TIGRFAMs:TIGR03060
InterPro:Thf1UniParc:UPI000295811BSEG:seg:::
Description
Protein THYLAKOID FORMATION1, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400018330]
Coordinates
chr7:-:48334982..48341549
Molecular Weight (calculated)
33348.3 Da
IEP (calculated)
8.763
GRAVY (calculated)
-0.484
Length
293 amino acids
Sequence
(BLAST)
001: MAAVTSVSFS AITQSAERKS SVSSSRSIDT FRFRSNFSFD SVNVRSSNST SRFVVHCTSS SAADLPTVAD TKLKFLTAYK RPIPTVYNTV LQELIVQQHL
101: TRYKKSYQYD PVFALGFVTV YDQLMEGYPS EEDRNAIFKA YIEALKEDPE QYRADAQKLE EWARTQNANT LVDFSSKDGE IENIFKDIAQ RAGTKDGFCY
201: SRLFAVGLFR LLELANVTDP TILEKLCAAL NVNKKSVDRD LDVYRNLLSK LVQAKELLKE YVEREKKKRG ERETQKANET VTKCLGDYQY AGR
Best Arabidopsis Sequence Match ( AT2G20890.1 )
(BLAST)
001: MAATAISSLS FPALGQSDKI SNFASSRPLA SAIRICTKFS RLSLNSRSTS KSLIHCMSNV TADVPPVSET KSKFLKAYKR PIPSIYNTVL QELIVQQHLM
101: RYKKTYRYDP VFALGFVTVY DQLMEGYPSD QDRDAIFKAY IEALNEDPKQ YRIDAQKMEE WARSQTSASL VDFSSKEGDI EAVLKDIAGR AGSKEGFSYS
201: RFFAVGLFRL LELASATDPT VLDKLCASLN INKKSVDRDL DVYRNLLSKL VQAKELLKEY VEREKKKQGE RAQSQKANET ISKCLGDTLY NPSFLVERKS
Arabidopsis Description
THF1THF1 [Source:UniProtKB/TrEMBL;Acc:A0A178VVV5]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.