Factsheet for TraesCS2B01G233300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

plastid: 22160430
golgi: 25769308

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G206200.2
TraesCS4B01G109800.2
TraesCS4D01G107200.1
TraesCS5A01G107900.1
TraesCS5B01G115400.1
TraesCS5D01G122800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G20890.1	TraesCS4A01G206200.2	AT1G35670.1	19130088
AT2G20890.1	TraesCS4B01G109800.2	AT1G35670.1	19130088
AT2G20890.1	TraesCS4D01G107200.1	AT1G35670.1	19130088
AT2G20890.1	TraesCS5A01G107900.1	AT1G35670.1	19130088
AT2G20890.1	TraesCS5B01G115400.1	AT1G35670.1	19130088
AT2G20890.1	TraesCS5D01G122800.1	AT1G35670.1	19130088
AT2G20890.1	TraesCS4A01G206200.2	AT4G09570.1	19130088
AT2G20890.1	TraesCS4B01G109800.2	AT4G09570.1	19130088
AT2G20890.1	TraesCS4D01G107200.1	AT4G09570.1	19130088
AT2G20890.1	TraesCS5A01G107900.1	AT4G09570.1	19130088
AT2G20890.1	TraesCS5B01G115400.1	AT4G09570.1	19130088
AT2G20890.1	TraesCS5D01G122800.1	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G206100.1	Wheat	mitochondrion, plastid	100.0	100.0
TraesCS2D01G210000.1	Wheat	plastid	99.3	99.3
HORVU2Hr1G041260.1	Barley	mitochondrion, plastid	98.25	98.25
Os07t0558500-01	Rice	plastid	87.06	86.76
EER99538	Sorghum	plastid	82.17	82.75
Zm00001d006588_P001	Maize	plastid	82.17	82.75
GSMUA_Achr9P12190_001	Banana	plastid	69.58	69.82
GSMUA_Achr8P03730_001	Banana	plastid	68.18	67.94
Bra031147.1-P	Field mustard	plastid	67.13	64.86
CDY13852	Canola	plastid	67.13	64.86
PGSC0003DMT400047218	Potato	cytosol, extracellular, plastid	66.43	64.85
CDX81988	Canola	plastid	66.43	64.41
KRH25480	Soybean	nucleus, plastid	65.38	64.26
Zm00001d021764_P002	Maize	plastid	67.83	64.24
VIT_12s0057g00020.t01	Wine grape	plastid	66.78	63.88
KRH26888	Soybean	nucleus, plastid	66.08	63.64
KRH22464	Soybean	nucleus, plastid	65.73	63.3
KRH56048	Soybean	nucleus, plastid	63.99	62.89
AT2G20890.1	Thale cress	plastid	65.03	62.0
Solyc07g054820.2.1	Tomato	plastid	49.65	56.8
KRH13607	Soybean	cytosol	10.84	41.33

Protein Annotations

MapMan:1.1.1.3.10	ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006091	GO:GO:0006810	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009507	GO:GO:0009527	GO:GO:0009528
GO:GO:0009532	GO:GO:0009534	GO:GO:0009535	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579
GO:GO:0009628	GO:GO:0009941	GO:GO:0009987	GO:GO:0010027	GO:GO:0010182	GO:GO:0010207
GO:GO:0010319	GO:GO:0015979	GO:GO:0015996	GO:GO:0016020	GO:GO:0016043	GO:GO:0045037
GO:GO:0045038	GO:GO:1902458	GO:GO:1903426	GO:GO:2000070	HAMAP:MF_01843	PFAM:PF11264
PANTHER:PTHR34793	PANTHER:PTHR34793:SF1	TIGRFAMs:TIGR03060	InterPro:Thf1	EnsemblPlantsGene:TraesCS2B01G233300	EnsemblPlants:TraesCS2B01G233300.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2B:+:231967312..231971702

Molecular Weight (calculated)

32325.6 Da

IEP (calculated)

9.312

GRAVY (calculated)

-0.423

Length

286 amino acids

Sequence
(BLAST)

001: MAAISSLPFA ALRRAADWRP STATAAVSVS GGVMLNARAR RGSRSVVRCV ATAGDIPPTV ADTKMNFLKS YKRPIPSIYS TVLQELLVQQ HLMRYKSTYQ
101: YDPVFALGFV TVYDQLMEGY PSTEDRDAIF KSYVTALNED PEQYRADAQR MEEWARSQNG NLLVEFSSRD GEIESILKDI SERAQGKGNF SYSRFFAVGL
201: FRLLELSNAT EPTVLDKLCA ALNINKKSVD RDLDVYRNLL SKLVQAKELL KEYIEREKKK REERLETPKP NEAVAKFDGS AYPLKH

Best Arabidopsis Sequence Match ( AT2G20890.1 )
(BLAST)

001: MAATAISSLS FPALGQSDKI SNFASSRPLA SAIRICTKFS RLSLNSRSTS KSLIHCMSNV TADVPPVSET KSKFLKAYKR PIPSIYNTVL QELIVQQHLM
101: RYKKTYRYDP VFALGFVTVY DQLMEGYPSD QDRDAIFKAY IEALNEDPKQ YRIDAQKMEE WARSQTSASL VDFSSKEGDI EAVLKDIAGR AGSKEGFSYS
201: RFFAVGLFRL LELASATDPT VLDKLCASLN INKKSVDRDL DVYRNLLSKL VQAKELLKEY VEREKKKQGE RAQSQKANET ISKCLGDTLY NPSFLVERKS

Arabidopsis Description

THF1THF1 [Source:UniProtKB/TrEMBL;Acc:A0A178VVV5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.