CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91803
KRH34983
KRH34984

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G20890.1	KRG91803	AT1G35670.1	19130088
AT2G20890.1	KRH34983	AT1G35670.1	19130088
AT2G20890.1	KRH34984	AT1G35670.1	19130088
AT2G20890.1	KRG91803	AT4G09570.1	19130088
AT2G20890.1	KRH34983	AT4G09570.1	19130088
AT2G20890.1	KRH34984	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56048	Soybean	nucleus, plastid	93.81	93.81
KRH26888	Soybean	nucleus, plastid	77.32	75.76
KRH22464	Soybean	nucleus, plastid	76.63	75.08
GSMUA_Achr9P12190_001	Banana	plastid	71.82	73.33
VIT_12s0057g00020.t01	Wine grape	plastid	74.57	72.58
PGSC0003DMT400047218	Potato	cytosol, extracellular, plastid	68.73	68.26
Os07t0558500-01	Rice	plastid	67.01	67.94
GSMUA_Achr8P03730_001	Banana	plastid	67.01	67.94
CDX81988	Canola	plastid	68.73	67.8
Bra031147.1-P	Field mustard	plastid	68.38	67.23
CDY13852	Canola	plastid	68.38	67.23
Zm00001d006588_P001	Maize	plastid	64.95	66.55
EER99538	Sorghum	plastid	64.26	65.85
HORVU2Hr1G041260.1	Barley	mitochondrion, plastid	64.26	65.38
TraesCS2A01G206100.1	Wheat	mitochondrion, plastid	64.26	65.38
TraesCS2B01G233300.1	Wheat	plastid	64.26	65.38
TraesCS2D01G210000.1	Wheat	plastid	63.92	65.03
AT2G20890.1	Thale cress	plastid	65.98	64.0
Solyc07g054820.2.1	Tomato	plastid	52.23	60.8
Zm00001d021764_P002	Maize	plastid	52.23	50.33
KRH13607	Soybean	cytosol	9.97	38.67

Protein Annotations

MapMan:1.1.1.3.10	EntrezGene:100792508	EMBL:ACUP02007264	ncoils:Coil	EnsemblPlantsGene:GLYMA_12G106600	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010207	GO:GO:0015979	GO:GO:0016043
UniProt:I1LRW8	EnsemblPlants:KRH25480	ProteinID:KRH25480	ProteinID:KRH25480.1	HAMAP:MF_01843	PFAM:PF11264
PANTHER:PTHR34793	PANTHER:PTHR34793:SF5	TIGRFAMs:TIGR03060	InterPro:Thf1	UniParc:UPI000233C5A1	SEG:seg

Description

hypothetical protein

Coordinates

chr12:-:9736662..9740365

Molecular Weight (calculated)

33243.5 Da

IEP (calculated)

8.958

GRAVY (calculated)

-0.444

Length

291 amino acids

Sequence
(BLAST)

001: MATVISSFSF STLTQSSSQR NLTTLSSNSP TFRFRVGFSC LNVGVRASNS ASKMVVRCSS SVAEPPTVSE TKLNFLKAYK RPIPSIYNTV LQELIVQQHL
101: MRYKRSYRYD AVFALGFVTV YEQLMEGYPS DEDRDAIFQA YIQALKEDPE QYRVDAKKLE EWARSQNPNS LLEFSSREGE VEGILKDIAE RAGGKGDFSY
201: SRFFAIGLFR LLELANAMEP TILEKLCAVL NVNKRSVDRD LDVYRNLLSK LVQAKELLKE YVDREKKKRE ERAEPQKSNE AITQQQQFSS L

Best Arabidopsis Sequence Match ( AT2G20890.1 )
(BLAST)

001: MAATAISSLS FPALGQSDKI SNFASSRPLA SAIRICTKFS RLSLNSRSTS KSLIHCMSNV TADVPPVSET KSKFLKAYKR PIPSIYNTVL QELIVQQHLM
101: RYKKTYRYDP VFALGFVTVY DQLMEGYPSD QDRDAIFKAY IEALNEDPKQ YRIDAQKMEE WARSQTSASL VDFSSKEGDI EAVLKDIAGR AGSKEGFSYS
201: RFFAVGLFRL LELASATDPT VLDKLCASLN INKKSVDRDL DVYRNLLSKL VQAKELLKEY VEREKKKQGE RAQSQKANET ISKCLGDTLY NPSFLVERKS

Arabidopsis Description

THF1THF1 [Source:UniProtKB/TrEMBL;Acc:A0A178VVV5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.