CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES09373
EES16732

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G20890.1	EES09373	AT1G35670.1	19130088
AT2G20890.1	EES16732	AT1G35670.1	19130088
AT2G20890.1	EES09373	AT4G09570.1	19130088
AT2G20890.1	EES16732	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d006588_P001	Maize	plastid	93.31	93.31
Os07t0558500-01	Rice	plastid	86.62	85.71
HORVU2Hr1G041260.1	Barley	mitochondrion, plastid	82.75	82.17
TraesCS2B01G233300.1	Wheat	plastid	82.75	82.17
TraesCS2A01G206100.1	Wheat	mitochondrion, plastid	82.75	82.17
TraesCS2D01G210000.1	Wheat	plastid	82.39	81.82
GSMUA_Achr9P12190_001	Banana	plastid	70.77	70.53
GSMUA_Achr8P03730_001	Banana	plastid	69.72	68.99
KRH56048	Soybean	nucleus, plastid	66.55	64.95
VIT_12s0057g00020.t01	Wine grape	plastid	67.96	64.55
Bra031147.1-P	Field mustard	plastid	67.25	64.53
CDY13852	Canola	plastid	67.25	64.53
KRH26888	Soybean	nucleus, plastid	67.25	64.31
KRH25480	Soybean	nucleus, plastid	65.85	64.26
CDX81988	Canola	plastid	66.55	64.07
KRH22464	Soybean	nucleus, plastid	66.9	63.97
PGSC0003DMT400047218	Potato	cytosol, extracellular, plastid	64.44	62.46
AT2G20890.1	Thale cress	plastid	64.08	60.67
Solyc07g054820.2.1	Tomato	plastid	48.59	55.2
KRH13607	Soybean	cytosol	10.56	40.0

Protein Annotations

MapMan:1.1.1.3.10	EntrezGene:8056327	UniProt:C5XBJ0	ncoils:Coil	EnsemblPlants:EER99538	ProteinID:EER99538
ProteinID:EER99538.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006810	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009058	GO:GO:0009507	GO:GO:0009527	GO:GO:0009528	GO:GO:0009532
GO:GO:0009534	GO:GO:0009535	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009628
GO:GO:0009941	GO:GO:0009987	GO:GO:0010027	GO:GO:0010182	GO:GO:0010207	GO:GO:0010319
GO:GO:0015979	GO:GO:0015996	GO:GO:0016020	GO:GO:0016043	GO:GO:0045037	GO:GO:0045038
GO:GO:1902458	GO:GO:1903426	GO:GO:2000070	HAMAP:MF_01843	PFAM:PF11264	PANTHER:PTHR34793
PANTHER:PTHR34793:SF1	EnsemblPlantsGene:SORBI_3002G338100	unigene:Sbi.3766	TIGRFAMs:TIGR03060	InterPro:Thf1	UniParc:UPI0001A84229
RefSeq:XP_002463017.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:70532745..70537338

Molecular Weight (calculated)

32061.2 Da

IEP (calculated)

9.602

GRAVY (calculated)

-0.422

Length

284 amino acids

Sequence
(BLAST)

001: MAAISSLPFA ALRGASEWRP SSTAAAVSGA VVLSARSRRG SRSVVRCVAT AGDVPPTVAE TKLNFLKSYK RPIPSIYSTV LQELLVQQHL MRYKRTYQYD
101: PVFGLGFVTV YDQLMEGYPS NEDRDSIFRA YITALNEDPT QYRADALKME EWARSQNASS LVDFSSRDGE IEAILKDISE RAKGKGNFSY SRFFAVGLFR
201: LLELANATEP TVLDKLCTAL NVSKRSVDRD LDVYRNILSK LVQAKELLKE YVDREKKKRE ERSETPKPNE AVTKFDGNLY SMRH

Best Arabidopsis Sequence Match ( AT2G20890.1 )
(BLAST)

001: MAATAISSLS FPALGQSDKI SNFASSRPLA SAIRICTKFS RLSLNSRSTS KSLIHCMSNV TADVPPVSET KSKFLKAYKR PIPSIYNTVL QELIVQQHLM
101: RYKKTYRYDP VFALGFVTVY DQLMEGYPSD QDRDAIFKAY IEALNEDPKQ YRIDAQKMEE WARSQTSASL VDFSSKEGDI EAVLKDIAGR AGSKEGFSYS
201: RFFAVGLFRL LELASATDPT VLDKLCASLN INKKSVDRDL DVYRNLLSKL VQAKELLKEY VEREKKKQGE RAQSQKANET ISKCLGDTLY NPSFLVERKS

Arabidopsis Description

THF1THF1 [Source:UniProtKB/TrEMBL;Acc:A0A178VVV5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.