Factsheet for Solyc07g054820.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
nucleus 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g065380.2.1
Solyc11g018610.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G20890.1	Solyc06g065380.2.1	AT1G35670.1	19130088
AT2G20890.1	Solyc11g018610.1.1	AT1G35670.1	19130088
AT2G20890.1	Solyc06g065380.2.1	AT4G09570.1	19130088
AT2G20890.1	Solyc11g018610.1.1	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400047218	Potato	cytosol, extracellular, plastid	90.4	77.13
KRH56048	Soybean	nucleus, plastid	62.0	53.26
KRH26888	Soybean	nucleus, plastid	62.8	52.86
VIT_12s0057g00020.t01	Wine grape	plastid	63.2	52.84
KRH22464	Soybean	nucleus, plastid	62.4	52.53
KRH25480	Soybean	nucleus, plastid	60.8	52.23
TraesCS2B01G233300.1	Wheat	plastid	56.8	49.65
TraesCS2A01G206100.1	Wheat	mitochondrion, plastid	56.8	49.65
HORVU2Hr1G041260.1	Barley	mitochondrion, plastid	56.8	49.65
Os07t0558500-01	Rice	plastid	56.8	49.48
TraesCS2D01G210000.1	Wheat	plastid	56.4	49.3
Bra031147.1-P	Field mustard	plastid	58.0	48.99
CDY13852	Canola	plastid	58.0	48.99
CDX81988	Canola	plastid	57.6	48.81
GSMUA_Achr9P12190_001	Banana	plastid	55.6	48.77
EER99538	Sorghum	plastid	55.2	48.59
AT2G20890.1	Thale cress	plastid	57.2	47.67
Zm00001d006588_P001	Maize	plastid	53.6	47.18
GSMUA_Achr8P03730_001	Banana	plastid	54.0	47.04
Zm00001d021764_P002	Maize	plastid	54.4	45.03
KRH13607	Soybean	cytosol	10.4	34.67

Protein Annotations

MapMan:1.1.1.3.10	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006810	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009058	GO:GO:0009507	GO:GO:0009527	GO:GO:0009528	GO:GO:0009532
GO:GO:0009534	GO:GO:0009535	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009628
GO:GO:0009941	GO:GO:0009987	GO:GO:0010027	GO:GO:0010182	GO:GO:0010207	GO:GO:0010319
GO:GO:0015979	GO:GO:0015996	GO:GO:0016020	GO:GO:0016043	GO:GO:0045037	GO:GO:0045038
GO:GO:1902458	GO:GO:1903426	GO:GO:2000070	UniProt:K4CG24	PFAM:PF11264	PANTHER:PTHR34793
PANTHER:PTHR34793:SF1	EnsemblPlantsGene:Solyc07g054820.2	EnsemblPlants:Solyc07g054820.2.1	InterPro:Thf1	UniParc:UPI000276C609	SEG:seg

Description

Protein THYLAKOID FORMATION 1, chloroplastic [Source:Projected from Arabidopsis thaliana (AT2G20890) UniProtKB/Swiss-Prot;Acc:Q9SKT0]

Coordinates

chr7:+:62995152..63001843

Molecular Weight (calculated)

28337.4 Da

IEP (calculated)

8.178

GRAVY (calculated)

-0.278

Length

250 amino acids

Sequence
(BLAST)

001: MAAVTSVSFS AITQSAERKS SVSSSRSIDT FRFRSNFSFD SVNVRSSNST SRFVVHCTSS SAADLPTVAD TKMKFLTAYK RPIPTVYNTV LQELIVQQHL
101: TRYKKSYQYD PVFALGFVTV YDQLMEGYPS EEDRNAIFKA YVEALKEDPE QYRADAQKLE EWARTQNANT LVDFSSKDGE IENIFKDIAQ RAGTKDGFCY
201: SRLFAVGLFR LLELANVTDP TILEKNQKVW TGTLTFIAIC CPSWFRLKSC

Best Arabidopsis Sequence Match ( AT2G20890.1 )
(BLAST)

001: MAATAISSLS FPALGQSDKI SNFASSRPLA SAIRICTKFS RLSLNSRSTS KSLIHCMSNV TADVPPVSET KSKFLKAYKR PIPSIYNTVL QELIVQQHLM
101: RYKKTYRYDP VFALGFVTVY DQLMEGYPSD QDRDAIFKAY IEALNEDPKQ YRIDAQKMEE WARSQTSASL VDFSSKEGDI EAVLKDIAGR AGSKEGFSYS
201: RFFAVGLFRL LELASATDPT VLDKLCASLN INKKSVDRDL DVYRNLLSKL VQAKELLKEY VEREKKKQGE RAQSQKANET ISKCLGDTLY NPSFLVERKS

Arabidopsis Description

THF1THF1 [Source:UniProtKB/TrEMBL;Acc:A0A178VVV5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.