Factsheet for GSMUA_Achr9P12190_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P08110_001
GSMUA_Achr6P25560_001
GSMUA_Achr9P08680_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G20890.1	GSMUA_Achr10P...	AT1G35670.1	19130088
AT2G20890.1	GSMUA_Achr2P08110_001	AT1G35670.1	19130088
AT2G20890.1	GSMUA_Achr6P25560_001	AT1G35670.1	19130088
AT2G20890.1	GSMUA_Achr9P08680_001	AT1G35670.1	19130088
AT2G20890.1	GSMUA_Achr10P...	AT4G09570.1	19130088
AT2G20890.1	GSMUA_Achr2P08110_001	AT4G09570.1	19130088
AT2G20890.1	GSMUA_Achr6P25560_001	AT4G09570.1	19130088
AT2G20890.1	GSMUA_Achr9P08680_001	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P03730_001	Banana	plastid	82.46	81.88
Zm00001d006588_P001	Maize	plastid	71.93	72.18
Os07t0558500-01	Rice	plastid	72.63	72.13
KRH25480	Soybean	nucleus, plastid	73.33	71.82
KRH56048	Soybean	nucleus, plastid	72.63	71.13
EER99538	Sorghum	plastid	70.53	70.77
TraesCS2B01G233300.1	Wheat	plastid	69.82	69.58
TraesCS2A01G206100.1	Wheat	mitochondrion, plastid	69.82	69.58
VIT_12s0057g00020.t01	Wine grape	plastid	72.98	69.57
TraesCS2D01G210000.1	Wheat	plastid	69.47	69.23
HORVU2Hr1G041260.1	Barley	mitochondrion, plastid	69.47	69.23
KRH26888	Soybean	nucleus, plastid	70.53	67.68
KRH22464	Soybean	nucleus, plastid	70.18	67.34
Bra031147.1-P	Field mustard	plastid	67.37	64.86
CDY13852	Canola	plastid	67.37	64.86
PGSC0003DMT400047218	Potato	cytosol, extracellular, plastid	66.67	64.85
CDX81988	Canola	plastid	66.32	64.07
AT2G20890.1	Thale cress	plastid	64.56	61.33
Solyc07g054820.2.1	Tomato	plastid	48.77	55.6
Zm00001d021764_P002	Maize	plastid	56.49	53.31
KRH13607	Soybean	cytosol	9.82	37.33

Protein Annotations

EnsemblPlants:GSMUA_Achr9P12190_001	EnsemblPlants:GSMUA_Achr9T12190_001	EnsemblPlantsGene:GSMUA_Achr9G12190_001	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0010207	GO:GO:0015979	GO:GO:0016043	HAMAP:MF_01843	InterPro:Thf1
ncoils:Coil	PANTHER:PTHR34793	PANTHER:PTHR34793:SF5	PFAM:PF11264	TIGRFAMs:TIGR03060	UniParc:UPI000295BF5F
UniProt:M0TZM8	MapMan:1.1.1.3.10	:	:	:	:

Description

Protein THYLAKOID FORMATION1, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr9G12190_001]

Coordinates

chr9:-:7958521..7964635

Molecular Weight (calculated)

32656.1 Da

IEP (calculated)

9.598

GRAVY (calculated)

-0.412

Length

285 amino acids

Sequence
(BLAST)

001: MASIPSVSFA SPCRQAAERR LTFAGPALRG FRFEAPKFSS RMVVRCVAAA SYAPPTVSET KLNFLKSYKR PIPSIYNTVL QELLVQQHLM RYKRTYQYDA
101: VFALGFVTVY EQLMEGYPNS EDRDAIFQAY IQALKEDPEQ YRSDAKKLEE WARAQTANSL IEFSTREGEV ETILKDISER ALSKGNFSYS RFFAIGLFRL
201: LELANATEPT VLEKLCAALN INKRSVDRDL DVYRNLLSKL VQAKELLKEY VDREKKKREE RSGTQKANEA ITKCTGDFRS VTFKL

Best Arabidopsis Sequence Match ( AT2G20890.1 )
(BLAST)

001: MAATAISSLS FPALGQSDKI SNFASSRPLA SAIRICTKFS RLSLNSRSTS KSLIHCMSNV TADVPPVSET KSKFLKAYKR PIPSIYNTVL QELIVQQHLM
101: RYKKTYRYDP VFALGFVTVY DQLMEGYPSD QDRDAIFKAY IEALNEDPKQ YRIDAQKMEE WARSQTSASL VDFSSKEGDI EAVLKDIAGR AGSKEGFSYS
201: RFFAVGLFRL LELASATDPT VLDKLCASLN INKKSVDRDL DVYRNLLSKL VQAKELLKEY VEREKKKQGE RAQSQKANET ISKCLGDTLY NPSFLVERKS

Arabidopsis Description

THF1THF1 [Source:UniProtKB/TrEMBL;Acc:A0A178VVV5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.