Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY71901 | Canola | cytosol | 33.33 | 86.67 |
| Bra036415.1-P | Field mustard | cytosol | 32.48 | 74.51 |
| Bra029824.1-P | Field mustard | cytosol | 91.45 | 43.85 |
| AT3G10220.1 | Thale cress | cytosol | 89.74 | 43.21 |
| KRH59802 | Soybean | cytosol | 74.36 | 35.8 |
| GSMUA_Achr8P34250_001 | Banana | cytosol | 71.79 | 34.57 |
| VIT_08s0007g05420.t01 | Wine grape | cytosol | 70.09 | 33.88 |
| PGSC0003DMT400079748 | Potato | cytosol | 67.52 | 32.51 |
| Solyc03g098170.2.1 | Tomato | cytosol | 67.52 | 32.51 |
| TraesCS2B01G620700.1 | Wheat | cytosol | 64.1 | 30.99 |
| TraesCS2A01G559500.1 | Wheat | cytosol | 63.25 | 30.45 |
| TraesCS1A01G130600.1 | Wheat | cytosol | 46.15 | 29.35 |
| Os04t0692100-01 | Rice | cytosol | 59.83 | 28.46 |
| Zm00001d002942_P002 | Maize | cytosol | 57.27 | 27.24 |
| TraesCS2D01G571000.1 | Wheat | cytosol | 64.1 | 27.17 |
| KXG27519 | Sorghum | cytosol | 56.41 | 27.05 |
| HORVU2Hr1G127090.6 | Barley | cytosol | 41.03 | 26.23 |
| KRH41118 | Soybean | endoplasmic reticulum | 11.11 | 8.84 |
Protein Annotations
| EnsemblPlants:Bra034098.1 | EnsemblPlants:Bra034098.1-P | EnsemblPlantsGene:Bra034098 | Gene3D:3.10.20.90 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR000626 | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_dom | PFAM:PF14560 | SUPFAM:SSF54236 |
| UniParc:UPI00025441AD | UniProt:M4EZ55 | MapMan:20.3.3.1.2 | : | : | : |
Description
AT3G10220 (E=2e-050) | tubulin folding cofactor B
Coordinates
chrA01:-:27461549..27462808
Molecular Weight (calculated)
13365.3 Da
IEP (calculated)
4.239
GRAVY (calculated)
-0.717
Length
117 amino acids
Sequence
(BLAST)
(BLAST)
001: MWKKCGTSVN AMALELYDES GSKFAALSDD SRPLGFYSPF DGFWLHIVDL DPSSVTTGGW LEDTSLVEKY NISEEDYAKR TDSFRKFKEK RVSQNPAASE
101: VKFGDYPERD PFEEDEI
101: VKFGDYPERD PFEEDEI
001: MATSRLQLEG DDSVHLHITH ANLKSFSADA RFSPQMSVEA VKEKLWKKCG TSVNSMALEL YDDSGSKVAV LSDDSRPLGF FSPFDGFRLH IIDLDPSSVT
101: TGGWLEDTSL VEKYNISEED YAKRTDSFRK FKEKRVSQNP VAAEAKTKEN YMEDLCANIK VGDRCQVEPG EKRGMVKYVG RAESLGPGYW VGIQYDEPLG
201: KHDGMVKGTR FFECPRLQGG MVRPDKVKVG DYPERDPFEE DEI
101: TGGWLEDTSL VEKYNISEED YAKRTDSFRK FKEKRVSQNP VAAEAKTKEN YMEDLCANIK VGDRCQVEPG EKRGMVKYVG RAESLGPGYW VGIQYDEPLG
201: KHDGMVKGTR FFECPRLQGG MVRPDKVKVG DYPERDPFEE DEI
Arabidopsis Description
TFCBTubulin-folding cofactor B [Source:UniProtKB/Swiss-Prot;Acc:Q67Z52]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.