Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra034098.1-P | Field mustard | nucleus | 43.21 | 89.74 |
| Bra029824.1-P | Field mustard | cytosol | 89.3 | 88.93 |
| CDY08619 | Canola | cytosol | 88.89 | 88.52 |
| CDY00913 | Canola | cytosol | 87.24 | 86.89 |
| Bra036415.1-P | Field mustard | cytosol | 18.11 | 86.27 |
| CDY69931 | Canola | cytosol | 18.11 | 86.27 |
| CDY71901 | Canola | cytosol | 15.64 | 84.44 |
| GSMUA_Achr8P34250_001 | Banana | cytosol | 76.54 | 76.54 |
| VIT_08s0007g05420.t01 | Wine grape | cytosol | 74.07 | 74.38 |
| KRH59802 | Soybean | cytosol | 72.02 | 72.02 |
| CDY22225 | Canola | cytosol | 55.56 | 69.95 |
| Solyc03g098170.2.1 | Tomato | cytosol | 69.55 | 69.55 |
| PGSC0003DMT400079748 | Potato | cytosol | 68.31 | 68.31 |
| TraesCS2A01G559500.1 | Wheat | cytosol | 67.49 | 67.49 |
| TraesCS2B01G620700.1 | Wheat | cytosol | 66.67 | 66.94 |
| Os04t0692100-01 | Rice | cytosol | 64.61 | 63.82 |
| Zm00001d002942_P002 | Maize | cytosol | 64.2 | 63.41 |
| KXG27519 | Sorghum | cytosol | 63.37 | 63.11 |
| HORVU2Hr1G127090.6 | Barley | cytosol | 45.27 | 60.11 |
| TraesCS2D01G571000.1 | Wheat | cytosol | 67.9 | 59.78 |
| TraesCS1A01G130600.1 | Wheat | cytosol | 31.69 | 41.85 |
| KRH41118 | Soybean | endoplasmic reticulum | 20.99 | 34.69 |
Protein Annotations
| Gene3D:2.30.30.190 | MapMan:20.3.3.1.2 | PDB:2KJ6 | Gene3D:3.10.20.90 | EntrezGene:820184 | ProteinID:AAF02820.1 |
| ProteinID:AEE74873.1 | EMBL:AF486849 | EMBL:AK176183 | EMBL:AK176266 | EMBL:AK176704 | ArrayExpress:AT3G10220 |
| EnsemblPlantsGene:AT3G10220 | RefSeq:AT3G10220 | TAIR:AT3G10220 | RefSeq:AT3G10220-TAIR-G | EnsemblPlants:AT3G10220.1 | TAIR:AT3G10220.1 |
| Unigene:At.71154 | InterPro:CAP-Gly_dom_sf | InterPro:CAP-Gly_domain | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009524 | GO:GO:0009790 | GO:GO:0009791 |
| GO:GO:0009793 | GO:GO:0009987 | GO:GO:0051301 | InterPro:IPR000626 | InterPro:IPR000938 | InterPro:IPR036859 |
| RefSeq:NP_187633.2 | PFAM:PF01302 | PFAM:PF14560 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50245 | PANTHER:PTHR18916 | UniProt:Q67Z52 |
| SMART:SM01052 | SUPFAM:SSF54236 | SUPFAM:SSF74924 | UniParc:UPI0000163373 | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_dom |
Description
TFCBTubulin-folding cofactor B [Source:UniProtKB/Swiss-Prot;Acc:Q67Z52]
Coordinates
chr3:+:3161706..3164231
Molecular Weight (calculated)
27332.2 Da
IEP (calculated)
5.099
GRAVY (calculated)
-0.639
Length
243 amino acids
Sequence
(BLAST)
(BLAST)
001: MATSRLQLEG DDSVHLHITH ANLKSFSADA RFSPQMSVEA VKEKLWKKCG TSVNSMALEL YDDSGSKVAV LSDDSRPLGF FSPFDGFRLH IIDLDPSSVT
101: TGGWLEDTSL VEKYNISEED YAKRTDSFRK FKEKRVSQNP VAAEAKTKEN YMEDLCANIK VGDRCQVEPG EKRGMVKYVG RAESLGPGYW VGIQYDEPLG
201: KHDGMVKGTR FFECPRLQGG MVRPDKVKVG DYPERDPFEE DEI
101: TGGWLEDTSL VEKYNISEED YAKRTDSFRK FKEKRVSQNP VAAEAKTKEN YMEDLCANIK VGDRCQVEPG EKRGMVKYVG RAESLGPGYW VGIQYDEPLG
201: KHDGMVKGTR FFECPRLQGG MVRPDKVKVG DYPERDPFEE DEI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.