Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY08619 | Canola | cytosol | 98.77 | 98.77 |
| CDY00913 | Canola | cytosol | 97.13 | 97.13 |
| Bra034098.1-P | Field mustard | nucleus | 43.85 | 91.45 |
| Bra036415.1-P | Field mustard | cytosol | 18.85 | 90.2 |
| AT3G10220.1 | Thale cress | cytosol | 88.93 | 89.3 |
| GSMUA_Achr8P34250_001 | Banana | cytosol | 73.77 | 74.07 |
| VIT_08s0007g05420.t01 | Wine grape | cytosol | 73.36 | 73.97 |
| KRH59802 | Soybean | cytosol | 72.13 | 72.43 |
| Solyc03g098170.2.1 | Tomato | cytosol | 68.44 | 68.72 |
| PGSC0003DMT400079748 | Potato | cytosol | 68.03 | 68.31 |
| TraesCS2A01G559500.1 | Wheat | cytosol | 66.8 | 67.08 |
| TraesCS2B01G620700.1 | Wheat | cytosol | 66.39 | 66.94 |
| KXG27519 | Sorghum | cytosol | 64.75 | 64.75 |
| Zm00001d002942_P002 | Maize | cytosol | 65.16 | 64.63 |
| Os04t0692100-01 | Rice | cytosol | 64.75 | 64.23 |
| TraesCS2D01G571000.1 | Wheat | cytosol | 67.62 | 59.78 |
| HORVU2Hr1G127090.6 | Barley | cytosol | 44.67 | 59.56 |
| TraesCS1A01G130600.1 | Wheat | cytosol | 30.74 | 40.76 |
| KRH41118 | Soybean | endoplasmic reticulum | 20.9 | 34.69 |
Protein Annotations
| Gene3D:2.30.30.190 | MapMan:20.3.3.1.2 | Gene3D:3.10.20.90 | EnsemblPlantsGene:Bra029824 | EnsemblPlants:Bra029824.1 | EnsemblPlants:Bra029824.1-P |
| InterPro:CAP-Gly_dom_sf | InterPro:CAP-Gly_domain | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR000626 |
| InterPro:IPR000938 | InterPro:IPR036859 | UniProt:M4EM04 | PFAM:PF01302 | PFAM:PF14560 | PFscan:PS50245 |
| PANTHER:PTHR18916 | SMART:SM01052 | SUPFAM:SSF54236 | SUPFAM:SSF74924 | UniParc:UPI0002547A35 | InterPro:Ubiquitin-like_domsf |
| InterPro:Ubiquitin_dom | : | : | : | : | : |
Description
AT3G10220 (E=3e-129) | tubulin folding cofactor B
Coordinates
chrA05:-:22135287..22136911
Molecular Weight (calculated)
27409.2 Da
IEP (calculated)
4.811
GRAVY (calculated)
-0.602
Length
244 amino acids
Sequence
(BLAST)
(BLAST)
001: MATSRLQMEG DDSVLLHVTH SNLKSFAADV RFSPQMNVEA VKEKLWRKCG TSVNAMALEL YDESGSKVAV LSDDTRPLGF YSPFDGFRLH IVDLDPSSVT
101: TGGWLEDTSL VEKYTISEED YAKRTDSYRK FKEKRVAQNP AASEVKTKEE DFMEDLCANI KVGDRCQVEP GEKRGVVKYV GRAESLGPGY WVGIQYDEPL
201: GKHDGMVKGT RLFECPQLHG GVVRPDKVKV GDYPERDPFE EDEI
101: TGGWLEDTSL VEKYTISEED YAKRTDSYRK FKEKRVAQNP AASEVKTKEE DFMEDLCANI KVGDRCQVEP GEKRGVVKYV GRAESLGPGY WVGIQYDEPL
201: GKHDGMVKGT RLFECPQLHG GVVRPDKVKV GDYPERDPFE EDEI
001: MATSRLQLEG DDSVHLHITH ANLKSFSADA RFSPQMSVEA VKEKLWKKCG TSVNSMALEL YDDSGSKVAV LSDDSRPLGF FSPFDGFRLH IIDLDPSSVT
101: TGGWLEDTSL VEKYNISEED YAKRTDSFRK FKEKRVSQNP VAAEAKTKEN YMEDLCANIK VGDRCQVEPG EKRGMVKYVG RAESLGPGYW VGIQYDEPLG
201: KHDGMVKGTR FFECPRLQGG MVRPDKVKVG DYPERDPFEE DEI
101: TGGWLEDTSL VEKYNISEED YAKRTDSFRK FKEKRVSQNP VAAEAKTKEN YMEDLCANIK VGDRCQVEPG EKRGMVKYVG RAESLGPGYW VGIQYDEPLG
201: KHDGMVKGTR FFECPRLQGG MVRPDKVKVG DYPERDPFEE DEI
Arabidopsis Description
TFCBTubulin-folding cofactor B [Source:UniProtKB/Swiss-Prot;Acc:Q67Z52]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.