Factsheet for Zm00001d002942_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG27519	Sorghum	cytosol	95.53	96.31
TraesCS2A01G559500.1	Wheat	cytosol	81.71	82.72
TraesCS2B01G620700.1	Wheat	cytosol	80.08	81.41
Os04t0692100-01	Rice	cytosol	80.89	80.89
TraesCS2D01G571000.1	Wheat	cytosol	80.89	72.1
HORVU2Hr1G127090.6	Barley	cytosol	52.85	71.04
KRH59802	Soybean	cytosol	65.45	66.26
GSMUA_Achr8P34250_001	Banana	cytosol	64.63	65.43
Bra029824.1-P	Field mustard	cytosol	64.63	65.16
CDY00913	Canola	cytosol	64.63	65.16
CDY08619	Canola	cytosol	63.82	64.34
AT3G10220.1	Thale cress	cytosol	63.41	64.2
VIT_08s0007g05420.t01	Wine grape	cytosol	63.01	64.05
PGSC0003DMT400079748	Potato	cytosol	61.38	62.14
Solyc03g098170.2.1	Tomato	cytosol	60.98	61.73
Bra034098.1-P	Field mustard	nucleus	27.24	57.27
CDY22225	Canola	cytosol	41.06	52.33
CDY69931	Canola	cytosol	10.57	50.98
Bra036415.1-P	Field mustard	cytosol	10.16	49.02
TraesCS1A01G130600.1	Wheat	cytosol	36.59	48.91
CDY71901	Canola	cytosol	8.94	48.89
KRH41118	Soybean	endoplasmic reticulum	18.7	31.29

Protein Annotations

Gene3D:2.30.30.190	MapMan:20.3.3.1.2	Gene3D:3.10.20.90	UniProt:A0A096S3I6	InterPro:CAP-Gly_dom_sf	InterPro:CAP-Gly_domain
GO:GO:0000003	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0007275	GO:GO:0008150
GO:GO:0009524	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009987	GO:GO:0051301
InterPro:IPR000626	InterPro:IPR000938	InterPro:IPR036859	ProteinID:ONM15738.1	PFAM:PF01302	PFAM:PF14560
PFscan:PS50245	PANTHER:PTHR18916	SMART:SM01052	SUPFAM:SSF54236	SUPFAM:SSF74924	UniParc:UPI0002218A08
InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	EnsemblPlantsGene:Zm00001d002942	EnsemblPlants:Zm00001d002942_P002	EnsemblPlants:Zm00001d002942_T002	SEG:seg

Description

Tubulin-folding cofactor B

Coordinates

chr2:-:27638889..27641302

Molecular Weight (calculated)

27463.2 Da

IEP (calculated)

4.681

GRAVY (calculated)

-0.622

Length

246 amino acids

Sequence
(BLAST)

001: MASSKLQLPA DDSVLLLITH SNLTTFAADI RVSQQTTVEA LKDKLWRKTG TAVASMRLQL RDDSGTKIAD LDDDAAPLAA YAPYNGYRIH VVDLDPSSLT
101: SGGWLEDTSL VDKYTMSDET YDKLDTNFRK FKEKMVPKNS PSEDKEESEK HMEELCSKIK VGDRCEVEPG AKRGTVKFVG RAEALGRGFW VGVQYDEPLG
201: KHDGMVKGIR FFECPQGHGA IVRPEKVKVG DFPERDPFED EDDDEI

Best Arabidopsis Sequence Match ( AT3G10220.1 )
(BLAST)

001: MATSRLQLEG DDSVHLHITH ANLKSFSADA RFSPQMSVEA VKEKLWKKCG TSVNSMALEL YDDSGSKVAV LSDDSRPLGF FSPFDGFRLH IIDLDPSSVT
101: TGGWLEDTSL VEKYNISEED YAKRTDSFRK FKEKRVSQNP VAAEAKTKEN YMEDLCANIK VGDRCQVEPG EKRGMVKYVG RAESLGPGYW VGIQYDEPLG
201: KHDGMVKGTR FFECPRLQGG MVRPDKVKVG DYPERDPFEE DEI

Arabidopsis Description

TFCBTubulin-folding cofactor B [Source:UniProtKB/Swiss-Prot;Acc:Q67Z52]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.