Factsheet for VIT_08s0007g05420.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g098170.2.1	Tomato	cytosol	81.41	81.07
PGSC0003DMT400079748	Potato	cytosol	81.41	81.07
GSMUA_Achr8P34250_001	Banana	cytosol	78.93	78.6
KRH59802	Soybean	cytosol	74.79	74.49
AT3G10220.1	Thale cress	cytosol	74.38	74.07
Bra029824.1-P	Field mustard	cytosol	73.97	73.36
CDY00913	Canola	cytosol	73.14	72.54
CDY08619	Canola	cytosol	72.73	72.13
Bra034098.1-P	Field mustard	nucleus	33.88	70.09
Os04t0692100-01	Rice	cytosol	68.18	67.07
TraesCS2B01G620700.1	Wheat	cytosol	66.94	66.94
CDY69931	Canola	cytosol	14.05	66.67
CDY71901	Canola	cytosol	12.4	66.67
TraesCS2A01G559500.1	Wheat	cytosol	66.94	66.67
Bra036415.1-P	Field mustard	cytosol	14.05	66.67
KXG27519	Sorghum	cytosol	65.29	64.75
Zm00001d002942_P002	Maize	cytosol	64.05	63.01
HORVU2Hr1G127090.6	Barley	cytosol	46.28	61.2
TraesCS2D01G571000.1	Wheat	cytosol	67.36	59.06
CDY22225	Canola	cytosol	44.63	55.96
TraesCS1A01G130600.1	Wheat	cytosol	31.41	41.3
KRH41118	Soybean	endoplasmic reticulum	22.31	36.73

Protein Annotations

EntrezGene:100250251	wikigene:100250251	Gene3D:2.30.30.190	MapMan:20.3.3.1.2	Gene3D:3.10.20.90	InterPro:CAP-Gly_dom_sf
InterPro:CAP-Gly_domain	ProteinID:CBI30103	ProteinID:CBI30103.3	UniProt:D7TIM7	EMBL:FN595991	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR000626	InterPro:IPR000938	InterPro:IPR036859	EntrezGene:LOC100250251
wikigene:LOC100250251	PFAM:PF01302	PFAM:PF14560	PFscan:PS50245	PANTHER:PTHR18916	SMART:SM01052
SUPFAM:SSF54236	SUPFAM:SSF74924	TIGR:TC57269	UniParc:UPI0001983F5A	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom
ArrayExpress:VIT_08s0007g05420	EnsemblPlantsGene:VIT_08s0007g05420	EnsemblPlants:VIT_08s0007g05420.t01	unigene:Vvi.1326	RefSeq:XP_002274343	RefSeq:XP_002274343.1
RefSeq:XP_002274425	RefSeq:XP_002274425.1	RefSeq:XP_003632738	RefSeq:XP_003632738.1	:	:

Description

No Description!

Coordinates

chr8:+:19365684..19382457

Molecular Weight (calculated)

27232.2 Da

IEP (calculated)

4.947

GRAVY (calculated)

-0.468

Length

242 amino acids

Sequence
(BLAST)

001: MASRLQIQED ESVSLRVTHG NIKSFSADVR FSLQMTVESV KDKLWRKCGT SVNSMCLELY DDTGAKISVL SDNLRPLGFY SPQDGYRLHV IDLDPSSVTS
101: GGWLEDTSLV EKYSISEEAY EKLDGTFRKF KEKLAFQNPS ILESKISDHY MGDLCANIKV GDRCEVEPGE KRGVVKFVGR AQSLAPGFWV GVQYDEPLGK
201: HDGMVKGTRY FDCPPLHGAM VRPDKVKVGD YPERDLFEED EI

Best Arabidopsis Sequence Match ( AT3G10220.1 )
(BLAST)

001: MATSRLQLEG DDSVHLHITH ANLKSFSADA RFSPQMSVEA VKEKLWKKCG TSVNSMALEL YDDSGSKVAV LSDDSRPLGF FSPFDGFRLH IIDLDPSSVT
101: TGGWLEDTSL VEKYNISEED YAKRTDSFRK FKEKRVSQNP VAAEAKTKEN YMEDLCANIK VGDRCQVEPG EKRGMVKYVG RAESLGPGYW VGIQYDEPLG
201: KHDGMVKGTR FFECPRLQGG MVRPDKVKVG DYPERDPFEE DEI

Arabidopsis Description

TFCBTubulin-folding cofactor B [Source:UniProtKB/Swiss-Prot;Acc:Q67Z52]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.