CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036415.1-P	Field mustard	cytosol	96.08	96.08
CDY71901	Canola	cytosol	82.35	93.33
CDY08619	Canola	cytosol	92.16	19.26
CDY00913	Canola	cytosol	90.2	18.85
AT3G10220.1	Thale cress	cytosol	86.27	18.11
PGSC0003DMT400079748	Potato	cytosol	72.55	15.23
Solyc03g098170.2.1	Tomato	cytosol	72.55	15.23
TraesCS1A01G130600.1	Wheat	cytosol	52.94	14.67
GSMUA_Achr8P34250_001	Banana	cytosol	68.63	14.4
VIT_08s0007g05420.t01	Wine grape	cytosol	66.67	14.05
KRH59802	Soybean	cytosol	64.71	13.58
TraesCS2A01G559500.1	Wheat	cytosol	60.78	12.76
TraesCS2B01G620700.1	Wheat	cytosol	58.82	12.4
TraesCS2D01G571000.1	Wheat	cytosol	60.78	11.23
Zm00001d002942_P002	Maize	cytosol	50.98	10.57
Os04t0692100-01	Rice	cytosol	50.98	10.57
KXG27519	Sorghum	cytosol	49.02	10.25
CDY22225	Canola	cytosol	7.84	2.07
KRH41118	Soybean	endoplasmic reticulum	3.92	1.36
HORVU2Hr1G127090.6	Barley	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY69931	EnsemblPlantsGene:GSBRNA2T00093649001	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000626	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	PFAM:PF14560	ProteinID:CDY69931	ProteinID:CDY69931.1
SUPFAM:SSF54236	UniParc:UPI0004EF3F67	UniProt:A0A078JWP8	MapMan:35.1	:	:

Description

BnaAnng32040DBnaAnng32040D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JWP8]

Coordinates

chrLK040707:-:1535..1690

Molecular Weight (calculated)

5508.5 Da

IEP (calculated)

4.267

GRAVY (calculated)

-0.288

Length

51 amino acids

Sequence
(BLAST)

1: MNVEAVKEKL WKKCGTSVNA MALELYDESG SNVAALSDDS RPLGLYSPFD G

Best Arabidopsis Sequence Match ( AT3G10220.1 )
(BLAST)

001: MATSRLQLEG DDSVHLHITH ANLKSFSADA RFSPQMSVEA VKEKLWKKCG TSVNSMALEL YDDSGSKVAV LSDDSRPLGF FSPFDGFRLH IIDLDPSSVT
101: TGGWLEDTSL VEKYNISEED YAKRTDSFRK FKEKRVSQNP VAAEAKTKEN YMEDLCANIK VGDRCQVEPG EKRGMVKYVG RAESLGPGYW VGIQYDEPLG
201: KHDGMVKGTR FFECPRLQGG MVRPDKVKVG DYPERDPFEE DEI

Arabidopsis Description

TFCBTubulin-folding cofactor B [Source:UniProtKB/Swiss-Prot;Acc:Q67Z52]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.