Factsheet for TraesCS2D01G571000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G620700.1	Wheat	cytosol	84.42	96.28
TraesCS2A01G559500.1	Wheat	cytosol	84.06	95.47
Os04t0692100-01	Rice	cytosol	73.55	82.52
KXG27519	Sorghum	cytosol	72.46	81.97
Zm00001d002942_P002	Maize	cytosol	72.1	80.89
HORVU2Hr1G127090.6	Barley	cytosol	52.54	79.23
GSMUA_Achr8P34250_001	Banana	cytosol	62.68	71.19
KRH59802	Soybean	cytosol	60.51	68.72
CDY00913	Canola	cytosol	60.51	68.44
AT3G10220.1	Thale cress	cytosol	59.78	67.9
Bra029824.1-P	Field mustard	cytosol	59.78	67.62
PGSC0003DMT400079748	Potato	cytosol	59.42	67.49
VIT_08s0007g05420.t01	Wine grape	cytosol	59.06	67.36
CDY08619	Canola	cytosol	59.42	67.21
Solyc03g098170.2.1	Tomato	cytosol	58.33	66.26
Bra034098.1-P	Field mustard	nucleus	27.17	64.1
CDY69931	Canola	cytosol	11.23	60.78
Bra036415.1-P	Field mustard	cytosol	10.87	58.82
CDY71901	Canola	cytosol	9.42	57.78
CDY22225	Canola	cytosol	38.41	54.92
KRH41118	Soybean	endoplasmic reticulum	18.48	34.69

Protein Annotations

Gene3D:2.30.30.190	MapMan:20.3.3.1.2	Gene3D:3.10.20.90	InterPro:CAP-Gly_dom_sf	InterPro:CAP-Gly_domain	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR000626	InterPro:IPR000938	InterPro:IPR036859	PFAM:PF01302
PFAM:PF14560	PFscan:PS50245	PANTHER:PTHR18916	SMART:SM01052	SUPFAM:SSF54236	SUPFAM:SSF74924
EnsemblPlantsGene:TraesCS2D01G571000	EnsemblPlants:TraesCS2D01G571000.1	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	SEG:seg	:

Description

No Description!

Coordinates

chr2D:+:637634358..637637072

Molecular Weight (calculated)

30227.8 Da

IEP (calculated)

5.461

GRAVY (calculated)

-0.409

Length

276 amino acids

Sequence
(BLAST)

001: MSKLQLPADD SVALRVTHSN LASFASDIRV SQQVRATNPP ALARISPPAW ISSLMAAGVG VSALLCSQTT VEALKEKLWK KTGTAVGSMR LELRDEAGAR
101: VADLDRDAAP LAAYSPYDGY RLHIIDLDPS SVTSGGWLED TSLVEKYTIS DEAYDKLGTN FRKFKEKMVS KNPVSDDKQS DNHMEELCAN IKVGDRCEVE
201: PGAKRGTVKF VGRAEALGRG FWVGVQYDEP LGKHDGMVKG VRFFECPQGH GAIVRPEKVK VGNFPERDPF DDEDEI

Best Arabidopsis Sequence Match ( AT3G10220.1 )
(BLAST)

001: MATSRLQLEG DDSVHLHITH ANLKSFSADA RFSPQMSVEA VKEKLWKKCG TSVNSMALEL YDDSGSKVAV LSDDSRPLGF FSPFDGFRLH IIDLDPSSVT
101: TGGWLEDTSL VEKYNISEED YAKRTDSFRK FKEKRVSQNP VAAEAKTKEN YMEDLCANIK VGDRCQVEPG EKRGMVKYVG RAESLGPGYW VGIQYDEPLG
201: KHDGMVKGTR FFECPRLQGG MVRPDKVKVG DYPERDPFEE DEI

Arabidopsis Description

TFCBTubulin-folding cofactor B [Source:UniProtKB/Swiss-Prot;Acc:Q67Z52]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.