Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G559500.1 | Wheat | cytosol | 95.87 | 95.47 |
| TraesCS2D01G571000.1 | Wheat | cytosol | 96.28 | 84.42 |
| Os04t0692100-01 | Rice | cytosol | 83.47 | 82.11 |
| KXG27519 | Sorghum | cytosol | 81.41 | 80.74 |
| HORVU2Hr1G127090.6 | Barley | cytosol | 60.74 | 80.33 |
| Zm00001d002942_P002 | Maize | cytosol | 81.41 | 80.08 |
| GSMUA_Achr8P34250_001 | Banana | cytosol | 70.66 | 70.37 |
| KRH59802 | Soybean | cytosol | 69.01 | 68.72 |
| PGSC0003DMT400079748 | Potato | cytosol | 68.18 | 67.9 |
| CDY00913 | Canola | cytosol | 68.18 | 67.62 |
| VIT_08s0007g05420.t01 | Wine grape | cytosol | 66.94 | 66.94 |
| Solyc03g098170.2.1 | Tomato | cytosol | 66.94 | 66.67 |
| AT3G10220.1 | Thale cress | cytosol | 66.94 | 66.67 |
| Bra029824.1-P | Field mustard | cytosol | 66.94 | 66.39 |
| CDY08619 | Canola | cytosol | 66.53 | 65.98 |
| Bra034098.1-P | Field mustard | nucleus | 30.99 | 64.1 |
| CDY69931 | Canola | cytosol | 12.4 | 58.82 |
| CDY71901 | Canola | cytosol | 10.74 | 57.78 |
| Bra036415.1-P | Field mustard | cytosol | 11.98 | 56.86 |
| CDY22225 | Canola | cytosol | 42.56 | 53.37 |
| KRH41118 | Soybean | endoplasmic reticulum | 21.49 | 35.37 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G620700.1 | EnsemblPlantsGene:TraesCS2B01G620700 | Gene3D:2.30.30.190 | Gene3D:3.10.20.90 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:CAP-Gly_dom_sf | InterPro:CAP-Gly_domain | InterPro:IPR000626 | InterPro:IPR000938 | InterPro:IPR036859 |
| InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_dom | PANTHER:PTHR18916 | PFAM:PF01302 | PFAM:PF14560 | PFscan:PS50245 |
| SEG:seg | SMART:SM01052 | SUPFAM:SSF54236 | SUPFAM:SSF74924 | MapMan:20.3.3.1.2 | : |
Description
No Description!
Coordinates
chr2B:+:795048709..795050978
Molecular Weight (calculated)
26848.6 Da
IEP (calculated)
4.874
GRAVY (calculated)
-0.573
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKLQLPADD SVTLRVTHSN LASFASDIRV SQQTTVEALK DKLWKKTGTA VGSMRLELRD EAGARVADLD RDAAPLAAYS PYDGYRLHII DLDPSSVTSG
101: GWLEDTSLVE KYTISDEAYN KLGTNFRKFK EKMVSKTPVS DDKQSDNQME ELCANIKVGD RCEVEPGAKR GTVKFVAKAE ALGRGFWVGV QYDEPLGKHD
201: GMVKGVRFFE CPQGHGAIVR PEKVKVGDFP ERDPFDDEED EI
101: GWLEDTSLVE KYTISDEAYN KLGTNFRKFK EKMVSKTPVS DDKQSDNQME ELCANIKVGD RCEVEPGAKR GTVKFVAKAE ALGRGFWVGV QYDEPLGKHD
201: GMVKGVRFFE CPQGHGAIVR PEKVKVGDFP ERDPFDDEED EI
001: MATSRLQLEG DDSVHLHITH ANLKSFSADA RFSPQMSVEA VKEKLWKKCG TSVNSMALEL YDDSGSKVAV LSDDSRPLGF FSPFDGFRLH IIDLDPSSVT
101: TGGWLEDTSL VEKYNISEED YAKRTDSFRK FKEKRVSQNP VAAEAKTKEN YMEDLCANIK VGDRCQVEPG EKRGMVKYVG RAESLGPGYW VGIQYDEPLG
201: KHDGMVKGTR FFECPRLQGG MVRPDKVKVG DYPERDPFEE DEI
101: TGGWLEDTSL VEKYNISEED YAKRTDSFRK FKEKRVSQNP VAAEAKTKEN YMEDLCANIK VGDRCQVEPG EKRGMVKYVG RAESLGPGYW VGIQYDEPLG
201: KHDGMVKGTR FFECPRLQGG MVRPDKVKVG DYPERDPFEE DEI
Arabidopsis Description
TFCBTubulin-folding cofactor B [Source:UniProtKB/Swiss-Prot;Acc:Q67Z52]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.