CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029824.1-P	Field mustard	cytosol	98.77	98.77
CDY00913	Canola	cytosol	96.72	96.72
CDY69931	Canola	cytosol	19.26	92.16
CDY71901	Canola	cytosol	16.39	88.89
AT3G10220.1	Thale cress	cytosol	88.52	88.89
GSMUA_Achr8P34250_001	Banana	cytosol	73.36	73.66
VIT_08s0007g05420.t01	Wine grape	cytosol	72.13	72.73
CDY22225	Canola	cytosol	57.38	72.54
KRH59802	Soybean	cytosol	72.13	72.43
Solyc03g098170.2.1	Tomato	cytosol	68.03	68.31
PGSC0003DMT400079748	Potato	cytosol	67.62	67.9
TraesCS2A01G559500.1	Wheat	cytosol	66.39	66.67
TraesCS2B01G620700.1	Wheat	cytosol	65.98	66.53
KXG27519	Sorghum	cytosol	63.93	63.93
Zm00001d002942_P002	Maize	cytosol	64.34	63.82
Os04t0692100-01	Rice	cytosol	63.52	63.01
TraesCS2D01G571000.1	Wheat	cytosol	67.21	59.42
HORVU2Hr1G127090.6	Barley	cytosol	43.85	58.47
TraesCS1A01G130600.1	Wheat	cytosol	30.74	40.76
KRH41118	Soybean	endoplasmic reticulum	20.49	34.01

Protein Annotations

Gene3D:2.30.30.190	MapMan:20.3.3.1.2	Gene3D:3.10.20.90	UniProt:A0A078F6E4	InterPro:CAP-Gly_dom_sf	InterPro:CAP-Gly_domain
EnsemblPlants:CDY08619	ProteinID:CDY08619	ProteinID:CDY08619.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00000414001	InterPro:IPR000626	InterPro:IPR000938	InterPro:IPR036859	PFAM:PF01302	PFAM:PF14560
PFscan:PS50245	PANTHER:PTHR18916	SMART:SM01052	SUPFAM:SSF54236	SUPFAM:SSF74924	UniParc:UPI0004EDE30B
InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	:	:	:	:

Description

BnaA05g28550DBnaA05g28550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F6E4]

Coordinates

chrLK031986:-:955529..957302

Molecular Weight (calculated)

27366.2 Da

IEP (calculated)

4.889

GRAVY (calculated)

-0.608

Length

244 amino acids

Sequence
(BLAST)

001: MATSRLQMEG DDSVLLHVTH SNLKSFAADV RFSPQMNVEA VKEKLWKKCG TSVNAMALEL YDESGSKVAV LSDDTRPLGF YSPFDGFRLH IVDLDPSSVT
101: TGGWLEDTSL VEKYTISEED YAKRTDSYRK FKEKRVAQNP AASEVKTKEE DFMEDLCGNI KVGNRCQVEP GEKRGVVKYV GRAESLGPGY WVGIQYDEPL
201: GKHDGMVKGT RLFECPQLHG GVVRPDKVKV GDYPERDPFE EDEI

Best Arabidopsis Sequence Match ( AT3G10220.1 )
(BLAST)

001: MATSRLQLEG DDSVHLHITH ANLKSFSADA RFSPQMSVEA VKEKLWKKCG TSVNSMALEL YDDSGSKVAV LSDDSRPLGF FSPFDGFRLH IIDLDPSSVT
101: TGGWLEDTSL VEKYNISEED YAKRTDSFRK FKEKRVSQNP VAAEAKTKEN YMEDLCANIK VGDRCQVEPG EKRGMVKYVG RAESLGPGYW VGIQYDEPLG
201: KHDGMVKGTR FFECPRLQGG MVRPDKVKVG DYPERDPFEE DEI

Arabidopsis Description

TFCBTubulin-folding cofactor B [Source:UniProtKB/Swiss-Prot;Acc:Q67Z52]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.