CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002942_P002	Maize	cytosol	96.31	95.53
TraesCS2A01G559500.1	Wheat	cytosol	81.97	82.3
Os04t0692100-01	Rice	cytosol	82.79	82.11
TraesCS2B01G620700.1	Wheat	cytosol	80.74	81.41
TraesCS2D01G571000.1	Wheat	cytosol	81.97	72.46
HORVU2Hr1G127090.6	Barley	cytosol	52.87	70.49
KRH59802	Soybean	cytosol	66.39	66.67
GSMUA_Achr8P34250_001	Banana	cytosol	65.16	65.43
VIT_08s0007g05420.t01	Wine grape	cytosol	64.75	65.29
Bra029824.1-P	Field mustard	cytosol	64.75	64.75
CDY00913	Canola	cytosol	64.75	64.75
CDY08619	Canola	cytosol	63.93	63.93
AT3G10220.1	Thale cress	cytosol	63.11	63.37
PGSC0003DMT400079748	Potato	cytosol	62.7	62.96
Solyc03g098170.2.1	Tomato	cytosol	61.48	61.73
Bra034098.1-P	Field mustard	nucleus	27.05	56.41
CDY22225	Canola	cytosol	41.8	52.85
CDY69931	Canola	cytosol	10.25	49.02
TraesCS1A01G130600.1	Wheat	cytosol	36.89	48.91
Bra036415.1-P	Field mustard	cytosol	9.84	47.06
CDY71901	Canola	cytosol	8.61	46.67
KRH41118	Soybean	endoplasmic reticulum	18.85	31.29

Protein Annotations

Gene3D:2.30.30.190	MapMan:20.3.3.1.2	Gene3D:3.10.20.90	EntrezGene:8064300	UniProt:A0A1B6PPC1	InterPro:CAP-Gly_dom_sf
InterPro:CAP-Gly_domain	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0007275
GO:GO:0008150	GO:GO:0009524	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009987
GO:GO:0051301	InterPro:IPR000626	InterPro:IPR000938	InterPro:IPR036859	EnsemblPlants:KXG27519	ProteinID:KXG27519
ProteinID:KXG27519.1	PFAM:PF01302	PFAM:PF14560	PFscan:PS50245	PANTHER:PTHR18916	SMART:SM01052
EnsemblPlantsGene:SORBI_3006G280600	SUPFAM:SSF54236	SUPFAM:SSF74924	unigene:Sbi.9437	UniParc:UPI00081ADB39	InterPro:Ubiquitin-like_domsf
InterPro:Ubiquitin_dom	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:61066392..61068614

Molecular Weight (calculated)

27210.2 Da

IEP (calculated)

5.094

GRAVY (calculated)

-0.574

Length

244 amino acids

Sequence
(BLAST)

001: MASSKLQLPA DDSVLLLVTH SNLSTFAADI RVSQQTTVEA LKDKLWRKTG TAVASMRLQL RDDTGAKIAD LDDDAAPLAA YAPYNGYRIH VVDLDPSSLT
101: SGGWLEDTSL VDKYKMSDEA YDKLDTNFRK FKEKMVPKNS PSEDKEQLEK HMEELCSKIK VGDRCEVEPG AKRGTVKFVG RAEALGRGFW VGVQYDEPLG
201: KHDGMVKGIR FFECPQGHGA IVRPEKVKQV GDFPERDPFE DDEI

Best Arabidopsis Sequence Match ( AT3G10220.1 )
(BLAST)

001: MATSRLQLEG DDSVHLHITH ANLKSFSADA RFSPQMSVEA VKEKLWKKCG TSVNSMALEL YDDSGSKVAV LSDDSRPLGF FSPFDGFRLH IIDLDPSSVT
101: TGGWLEDTSL VEKYNISEED YAKRTDSFRK FKEKRVSQNP VAAEAKTKEN YMEDLCANIK VGDRCQVEPG EKRGMVKYVG RAESLGPGYW VGIQYDEPLG
201: KHDGMVKGTR FFECPRLQGG MVRPDKVKVG DYPERDPFEE DEI

Arabidopsis Description

TFCBTubulin-folding cofactor B [Source:UniProtKB/Swiss-Prot;Acc:Q67Z52]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.