Factsheet for GSMUA_Achr8P34250_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0007g05420.t01	Wine grape	cytosol	78.6	78.93
AT3G10220.1	Thale cress	cytosol	76.54	76.54
Bra029824.1-P	Field mustard	cytosol	74.07	73.77
CDY00913	Canola	cytosol	73.66	73.36
CDY08619	Canola	cytosol	73.66	73.36
Solyc03g098170.2.1	Tomato	cytosol	72.84	72.84
PGSC0003DMT400079748	Potato	cytosol	72.43	72.43
Bra034098.1-P	Field mustard	nucleus	34.57	71.79
KRH59802	Soybean	cytosol	71.19	71.19
TraesCS2A01G559500.1	Wheat	cytosol	71.19	71.19
TraesCS2B01G620700.1	Wheat	cytosol	70.37	70.66
CDY69931	Canola	cytosol	14.4	68.63
Bra036415.1-P	Field mustard	cytosol	14.4	68.63
CDY71901	Canola	cytosol	12.35	66.67
Os04t0692100-01	Rice	cytosol	67.08	66.26
KXG27519	Sorghum	cytosol	65.43	65.16
Zm00001d002942_P002	Maize	cytosol	65.43	64.63
HORVU2Hr1G127090.6	Barley	cytosol	47.74	63.39
TraesCS2D01G571000.1	Wheat	cytosol	71.19	62.68
CDY22225	Canola	cytosol	45.68	57.51
TraesCS1A01G130600.1	Wheat	cytosol	34.57	45.65
KRH41118	Soybean	endoplasmic reticulum	20.99	34.69

Protein Annotations

Gene3D:2.30.30.190	MapMan:20.3.3.1.2	Gene3D:3.10.20.90	InterPro:CAP-Gly_dom_sf	InterPro:CAP-Gly_domain	GO:GO:0000003
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0007275	GO:GO:0008150	GO:GO:0009524
GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009987	GO:GO:0051301	EnsemblPlantsGene:GSMUA_Achr8G34250_001
EnsemblPlants:GSMUA_Achr8P34250_001	EnsemblPlants:GSMUA_Achr8T34250_001	InterPro:IPR000626	InterPro:IPR000938	InterPro:IPR036859	UniProt:M0TW27
PFAM:PF01302	PFAM:PF14560	ScanProsite:PS00845	PFscan:PS50245	PANTHER:PTHR18916	SMART:SM01052
SUPFAM:SSF54236	SUPFAM:SSF74924	UniParc:UPI0002948470	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	:

Description

Putative Tubulin-specific chaperone B [Source:GMGC_GENE;Acc:GSMUA_Achr8G34250_001]

Coordinates

chr8:-:35115189..35128269

Molecular Weight (calculated)

27464.4 Da

IEP (calculated)

4.667

GRAVY (calculated)

-0.607

Length

243 amino acids

Sequence
(BLAST)

001: MASRLQLPDD DSVVLRVTHA NVKSFSADVR FSLEMTVESV KEKLWKKCGT AVDSMVLELY DDAGSKVCDL SDATRPFGFY SPQDGYRLHI IDLDPSSVTS
101: GGWLEDTSLV EKYTISEDAY NKLDNNFRKF KEKMVSQNPM AKENKLSENY MEDLCANIKV GDRCEVEPGE KRGIVKFVGR AEALGPGFWV GIQYDEPLGK
201: HDGTVKGKRY FDCPPQHGVM LRPDKVKVGD YPERDPFEED EEI

Best Arabidopsis Sequence Match ( AT3G10220.1 )
(BLAST)

001: MATSRLQLEG DDSVHLHITH ANLKSFSADA RFSPQMSVEA VKEKLWKKCG TSVNSMALEL YDDSGSKVAV LSDDSRPLGF FSPFDGFRLH IIDLDPSSVT
101: TGGWLEDTSL VEKYNISEED YAKRTDSFRK FKEKRVSQNP VAAEAKTKEN YMEDLCANIK VGDRCQVEPG EKRGMVKYVG RAESLGPGYW VGIQYDEPLG
201: KHDGMVKGTR FFECPRLQGG MVRPDKVKVG DYPERDPFEE DEI

Arabidopsis Description

TFCBTubulin-folding cofactor B [Source:UniProtKB/Swiss-Prot;Acc:Q67Z52]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.