CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0007g05420.t01	Wine grape	cytosol	74.49	74.79
Bra034098.1-P	Field mustard	nucleus	35.8	74.36
Bra029824.1-P	Field mustard	cytosol	72.43	72.13
CDY08619	Canola	cytosol	72.43	72.13
AT3G10220.1	Thale cress	cytosol	72.02	72.02
CDY00913	Canola	cytosol	72.02	71.72
GSMUA_Achr8P34250_001	Banana	cytosol	71.19	71.19
Solyc03g098170.2.1	Tomato	cytosol	70.78	70.78
PGSC0003DMT400079748	Potato	cytosol	69.96	69.96
TraesCS2B01G620700.1	Wheat	cytosol	68.72	69.01
TraesCS2A01G559500.1	Wheat	cytosol	68.31	68.31
KXG27519	Sorghum	cytosol	66.67	66.39
Os04t0692100-01	Rice	cytosol	67.08	66.26
Zm00001d002942_P002	Maize	cytosol	66.26	65.45
CDY69931	Canola	cytosol	13.58	64.71
Bra036415.1-P	Field mustard	cytosol	13.58	64.71
CDY71901	Canola	cytosol	11.93	64.44
HORVU2Hr1G127090.6	Barley	cytosol	46.5	61.75
TraesCS2D01G571000.1	Wheat	cytosol	68.72	60.51
CDY22225	Canola	cytosol	45.27	56.99
KRH41118	Soybean	endoplasmic reticulum	24.69	40.82
TraesCS1A01G130600.1	Wheat	cytosol	30.45	40.22

Protein Annotations

EntrezGene:100500664	Gene3D:2.30.30.190	MapMan:20.3.3.1.2	Gene3D:3.10.20.90	EMBL:ACUP02003342	InterPro:CAP-Gly_dom_sf
InterPro:CAP-Gly_domain	EnsemblPlantsGene:GLYMA_05G203800	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1K6P4
InterPro:IPR000626	InterPro:IPR000938	InterPro:IPR036859	EnsemblPlants:KRH59802	ProteinID:KRH59802	ProteinID:KRH59802.1
PFAM:PF01302	PFAM:PF14560	PFscan:PS50245	PANTHER:PTHR18916	SMART:SM01052	SUPFAM:SSF54236
SUPFAM:SSF74924	UniParc:UPI00023C47F0	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	:	:

Description

hypothetical protein

Coordinates

chr5:+:38745554..38750623

Molecular Weight (calculated)

27109.9 Da

IEP (calculated)

5.410

GRAVY (calculated)

-0.542

Length

243 amino acids

Sequence
(BLAST)

001: MASSIQQVEG DESVVLRVTH SNLKTFASDI RFSLHLTVEA VKDKLWKKCG TSVNSMHLQL YDDARNKIAD LSDHSKPLAF YSPLDGFRLH VVDLDPSSVT
101: SGGWLEDTSL VEKYTISEEA YNKRPDTFRK YKEKFTSQNT ATAEAKIPDD CMGDLSADIK VGSRCEVEPG AKRGVVKFVG RAESLGPGFW VGVQYDEPLG
201: KHDGMVKGVR YFECPPSHGG MVRPEKVKVG DYPERDPFEE DEI

Best Arabidopsis Sequence Match ( AT3G10220.1 )
(BLAST)

001: MATSRLQLEG DDSVHLHITH ANLKSFSADA RFSPQMSVEA VKEKLWKKCG TSVNSMALEL YDDSGSKVAV LSDDSRPLGF FSPFDGFRLH IIDLDPSSVT
101: TGGWLEDTSL VEKYNISEED YAKRTDSFRK FKEKRVSQNP VAAEAKTKEN YMEDLCANIK VGDRCQVEPG EKRGMVKYVG RAESLGPGYW VGIQYDEPLG
201: KHDGMVKGTR FFECPRLQGG MVRPDKVKVG DYPERDPFEE DEI

Arabidopsis Description

TFCBTubulin-folding cofactor B [Source:UniProtKB/Swiss-Prot;Acc:Q67Z52]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.