Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- plasma membrane 4
- plastid 1
- extracellular 3
- endoplasmic reticulum 4
- vacuole 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G127090.6 | Barley | cytosol | 34.01 | 27.32 |
| KRH59802 | Soybean | cytosol | 40.82 | 24.69 |
| VIT_08s0007g05420.t01 | Wine grape | cytosol | 36.73 | 22.31 |
| TraesCS2B01G620700.1 | Wheat | cytosol | 35.37 | 21.49 |
| TraesCS2A01G559500.1 | Wheat | cytosol | 35.37 | 21.4 |
| Os04t0692100-01 | Rice | cytosol | 35.37 | 21.14 |
| AT3G10220.1 | Thale cress | cytosol | 34.69 | 20.99 |
| GSMUA_Achr8P34250_001 | Banana | cytosol | 34.69 | 20.99 |
| Bra029824.1-P | Field mustard | cytosol | 34.69 | 20.9 |
| CDY00913 | Canola | cytosol | 34.69 | 20.9 |
| CDY08619 | Canola | cytosol | 34.01 | 20.49 |
| Solyc03g098170.2.1 | Tomato | cytosol | 31.97 | 19.34 |
| PGSC0003DMT400079748 | Potato | cytosol | 31.29 | 18.93 |
| KXG27519 | Sorghum | cytosol | 31.29 | 18.85 |
| Zm00001d002942_P002 | Maize | cytosol | 31.29 | 18.7 |
| TraesCS2D01G571000.1 | Wheat | cytosol | 34.69 | 18.48 |
| CDY22225 | Canola | cytosol | 19.05 | 14.51 |
| Bra034098.1-P | Field mustard | nucleus | 8.84 | 11.11 |
| TraesCS1A01G130600.1 | Wheat | cytosol | 13.61 | 10.87 |
| CDY71901 | Canola | cytosol | 1.36 | 4.44 |
| CDY69931 | Canola | cytosol | 1.36 | 3.92 |
| Bra036415.1-P | Field mustard | cytosol | 1.36 | 3.92 |
Protein Annotations
| EMBL:ACUP02004750 | EnsemblPlants:KRH41118 | EnsemblPlantsGene:GLYMA_08G011200 | Gene3D:2.30.30.190 | InterPro:CAP-Gly_dom_sf | InterPro:CAP-Gly_domain |
| InterPro:IPR000938 | InterPro:IPR036859 | PANTHER:PTHR18916 | PANTHER:PTHR18916:SF6 | PFAM:PF01302 | PFscan:PS50245 |
| ProteinID:KRH41118 | ProteinID:KRH41118.1 | SMART:SM01052 | SUPFAM:SSF74924 | UniParc:UPI00023C5AE1 | UniProt:I1KP64 |
| MapMan:35.2 | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr8:+:895479..898704
Molecular Weight (calculated)
16747.1 Da
IEP (calculated)
4.788
GRAVY (calculated)
-0.102
Length
147 amino acids
Sequence
(BLAST)
(BLAST)
001: MCSTKLYYLI IEMSPSAAFW VFDNFIDLTF IAQIPDDCME DLSADIKVGV QYDEPLGKHD GMVKGVSYFE CPPSHSGMVR PEKVKVGDTL KEIPLKRMKY
101: ESSREAAFNV EGFPIWFSSS KSNICLEKFH LLTFQGSGYV EGFHFDF
101: ESSREAAFNV EGFPIWFSSS KSNICLEKFH LLTFQGSGYV EGFHFDF
001: MATSRLQLEG DDSVHLHITH ANLKSFSADA RFSPQMSVEA VKEKLWKKCG TSVNSMALEL YDDSGSKVAV LSDDSRPLGF FSPFDGFRLH IIDLDPSSVT
101: TGGWLEDTSL VEKYNISEED YAKRTDSFRK FKEKRVSQNP VAAEAKTKEN YMEDLCANIK VGDRCQVEPG EKRGMVKYVG RAESLGPGYW VGIQYDEPLG
201: KHDGMVKGTR FFECPRLQGG MVRPDKVKVG DYPERDPFEE DEI
101: TGGWLEDTSL VEKYNISEED YAKRTDSFRK FKEKRVSQNP VAAEAKTKEN YMEDLCANIK VGDRCQVEPG EKRGMVKYVG RAESLGPGYW VGIQYDEPLG
201: KHDGMVKGTR FFECPRLQGG MVRPDKVKVG DYPERDPFEE DEI
Arabidopsis Description
TFCBTubulin-folding cofactor B [Source:UniProtKB/Swiss-Prot;Acc:Q67Z52]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.