CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029824.1-P	Field mustard	cytosol	97.13	97.13
CDY08619	Canola	cytosol	96.72	96.72
CDY69931	Canola	cytosol	18.85	90.2
AT3G10220.1	Thale cress	cytosol	86.89	87.24
CDY71901	Canola	cytosol	15.98	86.67
GSMUA_Achr8P34250_001	Banana	cytosol	73.36	73.66
VIT_08s0007g05420.t01	Wine grape	cytosol	72.54	73.14
KRH59802	Soybean	cytosol	71.72	72.02
CDY22225	Canola	cytosol	56.15	70.98
Solyc03g098170.2.1	Tomato	cytosol	69.67	69.96
PGSC0003DMT400079748	Potato	cytosol	69.26	69.55
TraesCS2B01G620700.1	Wheat	cytosol	67.62	68.18
TraesCS2A01G559500.1	Wheat	cytosol	67.62	67.9
KXG27519	Sorghum	cytosol	64.75	64.75
Zm00001d002942_P002	Maize	cytosol	65.16	64.63
Os04t0692100-01	Rice	cytosol	64.75	64.23
HORVU2Hr1G127090.6	Barley	cytosol	45.49	60.66
TraesCS2D01G571000.1	Wheat	cytosol	68.44	60.51
TraesCS1A01G130600.1	Wheat	cytosol	31.15	41.3
KRH41118	Soybean	endoplasmic reticulum	20.9	34.69

Protein Annotations

Gene3D:2.30.30.190	MapMan:20.3.3.1.2	Gene3D:3.10.20.90	InterPro:CAP-Gly_dom_sf	InterPro:CAP-Gly_domain	EnsemblPlants:CDY00913
ProteinID:CDY00913	ProteinID:CDY00913.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00110909001
InterPro:IPR000626	InterPro:IPR000938	InterPro:IPR036859	PFAM:PF01302	PFAM:PF14560	PFscan:PS50245
PANTHER:PTHR18916	SMART:SM01052	SUPFAM:SSF54236	SUPFAM:SSF74924	UniParc:UPI0004EE6473	InterPro:Ubiquitin-like_domsf
InterPro:Ubiquitin_dom	:	:	:	:	:

Description

BnaC05g42870D

Coordinates

chrLK031923:+:80819..82656

Molecular Weight (calculated)

27395.3 Da

IEP (calculated)

4.889

GRAVY (calculated)

-0.585

Length

244 amino acids

Sequence
(BLAST)

001: MATSRLQMEG DDSVLLHVTH SNLKSFAADV RFSPQMNVEA VKEKLWKKCG TSVNAMSLEL YDESGSKVAV LSDDTRPLGF YSPFDGFRLH IVDLDPSSVT
101: TGGWLEDTSL VEKYTISEED YAKRTDSYRK FKEKRVAQKP AVSDVKTKEE DFMEDLCANI KVGDRCQVEP GEKRGVVKYV GRAESLGPGF WVGIQYDEPL
201: GKHDGMVKGT RLFECPQLHG GVVRPDKVKV GDYPERDPFE DDEI

Best Arabidopsis Sequence Match ( AT3G10220.1 )
(BLAST)

001: MATSRLQLEG DDSVHLHITH ANLKSFSADA RFSPQMSVEA VKEKLWKKCG TSVNSMALEL YDDSGSKVAV LSDDSRPLGF FSPFDGFRLH IIDLDPSSVT
101: TGGWLEDTSL VEKYNISEED YAKRTDSFRK FKEKRVSQNP VAAEAKTKEN YMEDLCANIK VGDRCQVEPG EKRGMVKYVG RAESLGPGYW VGIQYDEPLG
201: KHDGMVKGTR FFECPRLQGG MVRPDKVKVG DYPERDPFEE DEI

Arabidopsis Description

TFCBTubulin-folding cofactor B [Source:UniProtKB/Swiss-Prot;Acc:Q67Z52]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.