CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08619	Canola	cytosol	72.54	57.38
CDY00913	Canola	cytosol	70.98	56.15
AT3G10220.1	Thale cress	cytosol	69.95	55.56
GSMUA_Achr8P34250_001	Banana	cytosol	57.51	45.68
KRH59802	Soybean	cytosol	56.99	45.27
VIT_08s0007g05420.t01	Wine grape	cytosol	55.96	44.63
HORVU2Hr1G127090.6	Barley	cytosol	40.41	42.62
TraesCS2B01G620700.1	Wheat	cytosol	53.37	42.56
TraesCS2A01G559500.1	Wheat	cytosol	53.37	42.39
KXG27519	Sorghum	cytosol	52.85	41.8
Zm00001d002942_P002	Maize	cytosol	52.33	41.06
Solyc03g098170.2.1	Tomato	cytosol	51.3	40.74
Os04t0692100-01	Rice	cytosol	51.81	40.65
PGSC0003DMT400079748	Potato	cytosol	50.78	40.33
TraesCS2D01G571000.1	Wheat	cytosol	54.92	38.41
TraesCS1A01G130600.1	Wheat	cytosol	21.76	22.83
KRH41118	Soybean	endoplasmic reticulum	14.51	19.05
CDY69931	Canola	cytosol	2.07	7.84
CDY71901	Canola	cytosol	1.55	6.67

Protein Annotations

EnsemblPlants:CDY22225	EnsemblPlantsGene:GSBRNA2T00018651001	Gene3D:2.30.30.190	InterPro:CAP-Gly_dom_sf	InterPro:CAP-Gly_domain	InterPro:IPR000938
InterPro:IPR036859	PANTHER:PTHR18916	PFAM:PF01302	PFscan:PS50245	ProteinID:CDY22225	ProteinID:CDY22225.1
SMART:SM01052	SUPFAM:SSF74924	UniParc:UPI0004EE6DB4	UniProt:A0A078G6Y9	MapMan:20.3.3.1.2	:

Description

BnaC01g38760DBnaC01g38760D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G6Y9]

Coordinates

chrLK032128:+:640645..641909

Molecular Weight (calculated)

21541.1 Da

IEP (calculated)

5.761

GRAVY (calculated)

-0.158

Length

193 amino acids

Sequence
(BLAST)

001: MATSRLQMEG DDSVLLHVTH SNLKSFAADV RFSPQGSMMK VAPRLQLLVM MQDLSVPYPI VDLDPSSVTT GGWLEDTSLV ETYNISEEDY AKRTDSFRKL
101: KEKRVSQNPA ASEVKVTVIF LLIEYLCVNI KVGDRCQVEA GEKIGVVKYV GRAESLGPGY WVGIQYDEPL GKHDGMLVRI LKETLYVKPE KGV

Best Arabidopsis Sequence Match ( AT3G10220.1 )
(BLAST)

001: MATSRLQLEG DDSVHLHITH ANLKSFSADA RFSPQMSVEA VKEKLWKKCG TSVNSMALEL YDDSGSKVAV LSDDSRPLGF FSPFDGFRLH IIDLDPSSVT
101: TGGWLEDTSL VEKYNISEED YAKRTDSFRK FKEKRVSQNP VAAEAKTKEN YMEDLCANIK VGDRCQVEPG EKRGMVKYVG RAESLGPGYW VGIQYDEPLG
201: KHDGMVKGTR FFECPRLQGG MVRPDKVKVG DYPERDPFEE DEI

Arabidopsis Description

TFCBTubulin-folding cofactor B [Source:UniProtKB/Swiss-Prot;Acc:Q67Z52]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.