Factsheet for Os04t0692100-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 4
cytosol 3
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G620700.1	Wheat	cytosol	82.11	83.47
KXG27519	Sorghum	cytosol	82.11	82.79
TraesCS2A01G559500.1	Wheat	cytosol	80.49	81.48
Zm00001d002942_P002	Maize	cytosol	80.89	80.89
HORVU2Hr1G127090.6	Barley	cytosol	54.88	73.77
TraesCS2D01G571000.1	Wheat	cytosol	82.52	73.55
VIT_08s0007g05420.t01	Wine grape	cytosol	67.07	68.18
GSMUA_Achr8P34250_001	Banana	cytosol	66.26	67.08
KRH59802	Soybean	cytosol	66.26	67.08
PGSC0003DMT400079748	Potato	cytosol	65.45	66.26
Solyc03g098170.2.1	Tomato	cytosol	64.23	65.02
Bra029824.1-P	Field mustard	cytosol	64.23	64.75
CDY00913	Canola	cytosol	64.23	64.75
AT3G10220.1	Thale cress	cytosol	63.82	64.61
CDY08619	Canola	cytosol	63.01	63.52
Bra034098.1-P	Field mustard	nucleus	28.46	59.83
CDY22225	Canola	cytosol	40.65	51.81
CDY69931	Canola	cytosol	10.57	50.98
TraesCS1A01G130600.1	Wheat	cytosol	36.99	49.46
Bra036415.1-P	Field mustard	cytosol	10.16	49.02
CDY71901	Canola	cytosol	8.94	48.89
KRH41118	Soybean	endoplasmic reticulum	21.14	35.37

Protein Annotations

Gene3D:2.30.30.190	MapMan:20.3.3.1.2	Gene3D:3.10.20.90	EntrezGene:4337511	ProteinID:BAF16279.1	ProteinID:BAS91793.1
InterPro:CAP-Gly_dom_sf	InterPro:CAP-Gly_domain	ProteinID:EEE61971.1	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005829	GO:GO:0007275	GO:GO:0008150	GO:GO:0009524	GO:GO:0009790	GO:GO:0009791
GO:GO:0009793	GO:GO:0009987	GO:GO:0051301	InterPro:IPR000626	InterPro:IPR000938	InterPro:IPR036859
EnsemblPlantsGene:Os04g0692100	EnsemblPlants:Os04t0692100-01	PFAM:PF01302	PFAM:PF14560	PFscan:PS50245	PANTHER:PTHR18916
UniProt:Q0J8Q8	SMART:SM01052	SUPFAM:SSF54236	SUPFAM:SSF74924	UniParc:UPI0000DD9374	InterPro:Ubiquitin-like_domsf
InterPro:Ubiquitin_dom	RefSeq:XP_015636179.1	:	:	:	:

Description

Similar to Tubulin folding cofactor B. (Os04t0692100-01)

Coordinates

chr4:-:35423055..35426811

Molecular Weight (calculated)

27600.4 Da

IEP (calculated)

5.076

GRAVY (calculated)

-0.607

Length

246 amino acids

Sequence
(BLAST)

001: MSSSSSKLHL PADDSVLLLL THSNLSTFSS DIRVSKQTSV EALKDKLWRK TGTSVAFMRL QLRDDTGAMI ADLDHDDATL ASYSPYDGYR LHIIDLDPSS
101: ITSGGWLEDT SLVEKYTISD EAYNNLDTNF RKFKEKMAFK NPTSDDKQQQ SDKHMEELCA NIKVGDRCEV EPGAKRGTVK FVGRAEALGR GFWVGVQYDE
201: PLGKHDGMVK GIRFFECPQG HGAIVRPEKV KVGDYPERDP FEEEEI

Best Arabidopsis Sequence Match ( AT3G10220.1 )
(BLAST)

001: MATSRLQLEG DDSVHLHITH ANLKSFSADA RFSPQMSVEA VKEKLWKKCG TSVNSMALEL YDDSGSKVAV LSDDSRPLGF FSPFDGFRLH IIDLDPSSVT
101: TGGWLEDTSL VEKYNISEED YAKRTDSFRK FKEKRVSQNP VAAEAKTKEN YMEDLCANIK VGDRCQVEPG EKRGMVKYVG RAESLGPGYW VGIQYDEPLG
201: KHDGMVKGTR FFECPRLQGG MVRPDKVKVG DYPERDPFEE DEI

Arabidopsis Description

TFCBTubulin-folding cofactor B [Source:UniProtKB/Swiss-Prot;Acc:Q67Z52]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.