Factsheet for PGSC0003DMT400079748

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 3
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g098170.2.1	Tomato	cytosol	97.94	97.94
VIT_08s0007g05420.t01	Wine grape	cytosol	81.07	81.41
Bra036415.1-P	Field mustard	cytosol	15.23	72.55
CDY69931	Canola	cytosol	15.23	72.55
GSMUA_Achr8P34250_001	Banana	cytosol	72.43	72.43
CDY71901	Canola	cytosol	13.17	71.11
KRH59802	Soybean	cytosol	69.96	69.96
CDY00913	Canola	cytosol	69.55	69.26
AT3G10220.1	Thale cress	cytosol	68.31	68.31
TraesCS2B01G620700.1	Wheat	cytosol	67.9	68.18
Bra029824.1-P	Field mustard	cytosol	68.31	68.03
CDY08619	Canola	cytosol	67.9	67.62
Bra034098.1-P	Field mustard	nucleus	32.51	67.52
TraesCS2A01G559500.1	Wheat	cytosol	67.08	67.08
Os04t0692100-01	Rice	cytosol	66.26	65.45
KXG27519	Sorghum	cytosol	62.96	62.7
Zm00001d002942_P002	Maize	cytosol	62.14	61.38
HORVU2Hr1G127090.6	Barley	cytosol	45.68	60.66
TraesCS2D01G571000.1	Wheat	cytosol	67.49	59.42
CDY22225	Canola	cytosol	40.33	50.78
TraesCS1A01G130600.1	Wheat	cytosol	32.51	42.93
KRH41118	Soybean	endoplasmic reticulum	18.93	31.29

Protein Annotations

EntrezGene:102578402	Gene3D:2.30.30.190	MapMan:20.3.3.1.2	Gene3D:3.10.20.90	InterPro:CAP-Gly_dom_sf	InterPro:CAP-Gly_domain
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000626	InterPro:IPR000938	InterPro:IPR036859
UniProt:M1D2D7	PFAM:PF01302	PFAM:PF14560	EnsemblPlantsGene:PGSC0003DMG400031053	PGSC:PGSC0003DMG400031053	EnsemblPlants:PGSC0003DMT400079748
PFscan:PS50245	PANTHER:PTHR18916	SMART:SM01052	SUPFAM:SSF54236	SUPFAM:SSF74924	UniParc:UPI0002953357
InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	RefSeq:XP_006364381.1	RefSeq:XP_015159400.1	:	:

Description

Tubulin-specific chaperone B [Source:PGSC_GENE;Acc:PGSC0003DMG400031053]

Coordinates

chr3:+:45040925..45048304

Molecular Weight (calculated)

27111.0 Da

IEP (calculated)

4.770

GRAVY (calculated)

-0.532

Length

243 amino acids

Sequence
(BLAST)

001: MASQLQIQSD ESVLLRVTHS NMKSFSPEIR FSLQMSVEAV KDKLWKKCGT SVNSMSLELY DETGAKISVL SDNARPLGFY SPLDGYRLHV IDLDPASVTS
101: GGWLEDTSLV EKYTISEEAY EKLGGTFRKF KETLPLKQPP GQESKISDNN NSEDLCANIK IGDRCEVEPG ERRGTVKFVG QAETLAPGFW VGVQFDEPVG
201: KHDGMVKGKR YFDCPPLHGA IVRPDKVKIG DYPEKDPFED EEI

Best Arabidopsis Sequence Match ( AT3G10220.1 )
(BLAST)

001: MATSRLQLEG DDSVHLHITH ANLKSFSADA RFSPQMSVEA VKEKLWKKCG TSVNSMALEL YDDSGSKVAV LSDDSRPLGF FSPFDGFRLH IIDLDPSSVT
101: TGGWLEDTSL VEKYNISEED YAKRTDSFRK FKEKRVSQNP VAAEAKTKEN YMEDLCANIK VGDRCQVEPG EKRGMVKYVG RAESLGPGYW VGIQYDEPLG
201: KHDGMVKGTR FFECPRLQGG MVRPDKVKVG DYPERDPFEE DEI

Arabidopsis Description

TFCBTubulin-folding cofactor B [Source:UniProtKB/Swiss-Prot;Acc:Q67Z52]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.