Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 3
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400079748 | Potato | cytosol | 97.94 | 97.94 |
| VIT_08s0007g05420.t01 | Wine grape | cytosol | 81.07 | 81.41 |
| GSMUA_Achr8P34250_001 | Banana | cytosol | 72.84 | 72.84 |
| Bra036415.1-P | Field mustard | cytosol | 15.23 | 72.55 |
| CDY69931 | Canola | cytosol | 15.23 | 72.55 |
| CDY71901 | Canola | cytosol | 13.17 | 71.11 |
| KRH59802 | Soybean | cytosol | 70.78 | 70.78 |
| CDY00913 | Canola | cytosol | 69.96 | 69.67 |
| AT3G10220.1 | Thale cress | cytosol | 69.55 | 69.55 |
| Bra029824.1-P | Field mustard | cytosol | 68.72 | 68.44 |
| CDY08619 | Canola | cytosol | 68.31 | 68.03 |
| Bra034098.1-P | Field mustard | nucleus | 32.51 | 67.52 |
| TraesCS2B01G620700.1 | Wheat | cytosol | 66.67 | 66.94 |
| TraesCS2A01G559500.1 | Wheat | cytosol | 65.84 | 65.84 |
| Os04t0692100-01 | Rice | cytosol | 65.02 | 64.23 |
| KXG27519 | Sorghum | cytosol | 61.73 | 61.48 |
| Zm00001d002942_P002 | Maize | cytosol | 61.73 | 60.98 |
| HORVU2Hr1G127090.6 | Barley | cytosol | 44.86 | 59.56 |
| TraesCS2D01G571000.1 | Wheat | cytosol | 66.26 | 58.33 |
| CDY22225 | Canola | cytosol | 40.74 | 51.3 |
| TraesCS1A01G130600.1 | Wheat | cytosol | 32.1 | 42.39 |
| KRH41118 | Soybean | endoplasmic reticulum | 19.34 | 31.97 |
Protein Annotations
| Gene3D:2.30.30.190 | MapMan:20.3.3.1.2 | Gene3D:3.10.20.90 | InterPro:CAP-Gly_dom_sf | InterPro:CAP-Gly_domain | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR000626 | InterPro:IPR000938 | InterPro:IPR036859 | UniProt:K4BJN2 |
| PFAM:PF01302 | PFAM:PF14560 | PFscan:PS50245 | PANTHER:PTHR18916 | SMART:SM01052 | SUPFAM:SSF54236 |
| SUPFAM:SSF74924 | EnsemblPlantsGene:Solyc03g098170.2 | EnsemblPlants:Solyc03g098170.2.1 | UniParc:UPI0002768775 | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_dom |
Description
No Description!
Coordinates
chr3:-:60501915..60508809
Molecular Weight (calculated)
27228.3 Da
IEP (calculated)
4.860
GRAVY (calculated)
-0.556
Length
243 amino acids
Sequence
(BLAST)
(BLAST)
001: MASQLQIQGD ESVLLRVTHS NMKSFSPEIR FSLQMSVEAV KDKLWKKCGT SVNSMSLELY DETGTKISVL SDNARPLGFY SPLDGYRLHV IDLDPASVTS
101: GGWLEDTSLV EKYTISEEAY EKLGGTFRKF KETLPLKQPP GQESKISDNN NREDLCANIK IGDRCEVEPG ERRGMVKFVG QAETLAPGFW VGVQFDEPVG
201: KHDGMVKGKR YFDCPPLHGA MVRPDKVKIG DYPEKDPFED EEI
101: GGWLEDTSLV EKYTISEEAY EKLGGTFRKF KETLPLKQPP GQESKISDNN NREDLCANIK IGDRCEVEPG ERRGMVKFVG QAETLAPGFW VGVQFDEPVG
201: KHDGMVKGKR YFDCPPLHGA MVRPDKVKIG DYPEKDPFED EEI
001: MATSRLQLEG DDSVHLHITH ANLKSFSADA RFSPQMSVEA VKEKLWKKCG TSVNSMALEL YDDSGSKVAV LSDDSRPLGF FSPFDGFRLH IIDLDPSSVT
101: TGGWLEDTSL VEKYNISEED YAKRTDSFRK FKEKRVSQNP VAAEAKTKEN YMEDLCANIK VGDRCQVEPG EKRGMVKYVG RAESLGPGYW VGIQYDEPLG
201: KHDGMVKGTR FFECPRLQGG MVRPDKVKVG DYPERDPFEE DEI
101: TGGWLEDTSL VEKYNISEED YAKRTDSFRK FKEKRVSQNP VAAEAKTKEN YMEDLCANIK VGDRCQVEPG EKRGMVKYVG RAESLGPGYW VGIQYDEPLG
201: KHDGMVKGTR FFECPRLQGG MVRPDKVKVG DYPERDPFEE DEI
Arabidopsis Description
TFCBTubulin-folding cofactor B [Source:UniProtKB/Swiss-Prot;Acc:Q67Z52]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.