Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
- nucleus 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY69931 | Canola | cytosol | 96.08 | 96.08 |
| Bra034098.1-P | Field mustard | nucleus | 74.51 | 32.48 |
| Bra029824.1-P | Field mustard | cytosol | 90.2 | 18.85 |
| AT3G10220.1 | Thale cress | cytosol | 86.27 | 18.11 |
| PGSC0003DMT400079748 | Potato | cytosol | 72.55 | 15.23 |
| Solyc03g098170.2.1 | Tomato | cytosol | 72.55 | 15.23 |
| GSMUA_Achr8P34250_001 | Banana | cytosol | 68.63 | 14.4 |
| TraesCS1A01G130600.1 | Wheat | cytosol | 50.98 | 14.13 |
| VIT_08s0007g05420.t01 | Wine grape | cytosol | 66.67 | 14.05 |
| KRH59802 | Soybean | cytosol | 64.71 | 13.58 |
| TraesCS2A01G559500.1 | Wheat | cytosol | 58.82 | 12.35 |
| TraesCS2B01G620700.1 | Wheat | cytosol | 56.86 | 11.98 |
| TraesCS2D01G571000.1 | Wheat | cytosol | 58.82 | 10.87 |
| Zm00001d002942_P002 | Maize | cytosol | 49.02 | 10.16 |
| Os04t0692100-01 | Rice | cytosol | 49.02 | 10.16 |
| KXG27519 | Sorghum | cytosol | 47.06 | 9.84 |
| KRH41118 | Soybean | endoplasmic reticulum | 3.92 | 1.36 |
| HORVU2Hr1G127090.6 | Barley | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Bra036415.1 | EnsemblPlants:Bra036415.1-P | EnsemblPlantsGene:Bra036415 | Gene3D:3.10.20.90 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR000626 | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_dom | PFAM:PF14560 | SUPFAM:SSF54236 |
| UniParc:UPI0002540F96 | UniProt:M4F5Q9 | MapMan:35.1 | : | : | : |
Description
AT3G10220 (E=7e-021) | tubulin folding cofactor B
Coordinates
chrA07:-:572840..572995
Molecular Weight (calculated)
5512.4 Da
IEP (calculated)
4.267
GRAVY (calculated)
-0.359
Length
51 amino acids
Sequence
(BLAST)
(BLAST)
1: MNVEAVKEKL WKKCGTSVNA TALELYDESG SNVAALSDDS RPLGFYSPFD G
001: MATSRLQLEG DDSVHLHITH ANLKSFSADA RFSPQMSVEA VKEKLWKKCG TSVNSMALEL YDDSGSKVAV LSDDSRPLGF FSPFDGFRLH IIDLDPSSVT
101: TGGWLEDTSL VEKYNISEED YAKRTDSFRK FKEKRVSQNP VAAEAKTKEN YMEDLCANIK VGDRCQVEPG EKRGMVKYVG RAESLGPGYW VGIQYDEPLG
201: KHDGMVKGTR FFECPRLQGG MVRPDKVKVG DYPERDPFEE DEI
101: TGGWLEDTSL VEKYNISEED YAKRTDSFRK FKEKRVSQNP VAAEAKTKEN YMEDLCANIK VGDRCQVEPG EKRGMVKYVG RAESLGPGYW VGIQYDEPLG
201: KHDGMVKGTR FFECPRLQGG MVRPDKVKVG DYPERDPFEE DEI
Arabidopsis Description
TFCBTubulin-folding cofactor B [Source:UniProtKB/Swiss-Prot;Acc:Q67Z52]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.