CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY00508	Canola	cytosol	78.38	16.76
CDY58156	Canola	cytosol	82.43	16.76
CDX97482	Canola	cytosol	24.32	8.37
CDY26918	Canola	cytosol	20.27	5.93
CDY30977	Canola	cytosol	22.97	5.86
CDY71245	Canola	cytosol	18.92	5.53
CDX86557	Canola	cytosol, extracellular	6.76	4.95
CDX79188	Canola	cytosol	22.97	4.49
CDX68065	Canola	cytosol	22.97	4.49
CDY39423	Canola	cytosol	22.97	4.37
CDY41524	Canola	mitochondrion	25.68	4.37
CDY01241	Canola	cytosol	22.97	4.31
CDX93818	Canola	cytosol	22.97	4.31
CDY13136	Canola	cytosol	21.62	4.22
CDX84427	Canola	mitochondrion	24.32	4.14
CDY64947	Canola	cytosol	21.62	4.11
CDX94738	Canola	cytosol	20.27	3.96
CDX88342	Canola	cytosol	20.27	3.96
CDX87542	Canola	cytosol	20.27	3.96
CDY36960	Canola	cytosol	20.27	3.96
CDY22323	Canola	cytosol	20.27	3.96
CDY59757	Canola	cytosol	18.92	3.68
CDY13798	Canola	cytosol	18.92	3.66
CDX91678	Canola	cytosol	18.92	3.59
CDY41481	Canola	cytosol	18.92	3.59
CDY00452	Canola	cytosol	18.92	3.59
CDY04816	Canola	cytosol	17.57	3.33
CDY05455	Canola	cytosol	16.22	3.16
CDY05399	Canola	cytosol	16.22	3.16
CDX82904	Canola	cytosol	16.22	3.08
CDY21362	Canola	cytosol	16.22	3.08
CDX73269	Canola	cytosol	16.22	2.91
CDY32607	Canola	cytosol	5.41	2.48
CDX79124	Canola	cytosol	12.16	2.48
CDX86558	Canola	mitochondrion	1.35	0.71
CDX73268	Canola	cytosol	0.0	0.0
CDX81190	Canola	cytosol	0.0	0.0
CDY38887	Canola	cytosol	0.0	0.0
CDX89070	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDX86559	EnsemblPlantsGene:GSBRNA2T00145181001	Gene3D:3.90.180.10	GO:A0A078DE04	GO:GO:0008150	GO:GO:0008152
GO:GO:0055114	InterPro:ADH_N	InterPro:GroES-like_sf	PANTHER:PTHR43161	PANTHER:PTHR43161:SF8	PFAM:PF08240
ProteinID:CDX86559	ProteinID:CDX86559.1	SignalP:SignalP-noTM	SUPFAM:SSF50129	UniParc:UPI0004EF0081	MapMan:35.1

Description

BnaC08g01440D

Coordinates

chrLK031846:-:608139..608632

Molecular Weight (calculated)

8080.1 Da

IEP (calculated)

8.679

GRAVY (calculated)

0.214

Length

74 amino acids

Sequence
(BLAST)

1: MGKGGITCLL GWLVSSLNTL KIQPFPLPSL GPHDVRVRMK AVGICGSDVH YLKTMRCADF IGHECAGVIE EVRR

Best Arabidopsis Sequence Match ( AT5G51970.1 )
(BLAST)

001: MGKGGMSQGE GSKVEEENMA AWLVGINTLK IQPFLLPSVG PHDVRVRMKA VGICGSDVHY LKTMRCADFV VKEPMVIGHE CAGIIEEVGE EVKHLVVGDR
101: VALEPGISCW RCNLCREGRY NLCPEMKFFA TPPVHGSLAN QVVHPADLCF KLPENVSLEE GAMCEPLSVG VHACRRAEVG PETNVLVMGA GPIGLVTMLA
201: ARAFSVPRIV IVDVDENRLA VAKQLGADEI VQVTTNLEDV GSEVEQIQKA MGSNIDVTFD CAGFNKTMST ALAATRCGGK VCLVGMGHGI MTVPLTPAAA
301: REVDVVGVFR YKNTWPLCLE FLTSGKIDVK PLITHRFGFS QKEVEDAFET SARGSNAIKV MFNL

Arabidopsis Description

SDHSorbitol dehydrogenase [Source:UniProtKB/Swiss-Prot;Acc:Q9FJ95]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.