CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 2
cytosol 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029150.1-P	Field mustard	cytosol	100.0	100.0
CDX86558	Canola	mitochondrion	94.74	38.57
CDY32607	Canola	cytosol	96.49	34.16
CDY00508	Canola	cytosol	96.49	15.9
CDY58156	Canola	cytosol	94.74	14.84
CDX89070	Canola	cytosol	31.58	7.89
CDX97482	Canola	cytosol	28.07	7.44
CDY26918	Canola	cytosol	31.58	7.11
CDY71245	Canola	cytosol	26.32	5.93
CDY30977	Canola	cytosol	26.32	5.17
CDX73269	Canola	cytosol	33.33	4.6
CDX93818	Canola	cytosol	31.58	4.57
CDY01241	Canola	cytosol	31.58	4.57
CDX68065	Canola	cytosol	29.82	4.49
CDY64947	Canola	cytosol	29.82	4.37
CDY39423	Canola	cytosol	29.82	4.37
CDY41481	Canola	cytosol	29.82	4.36
CDX79188	Canola	cytosol	28.07	4.22
CDY59757	Canola	cytosol	28.07	4.21
CDY13798	Canola	cytosol	28.07	4.19
CDX84427	Canola	mitochondrion	31.58	4.14
CDY41524	Canola	mitochondrion	31.58	4.14
CDY04816	Canola	cytosol	28.07	4.1
CDY21362	Canola	cytosol	28.07	4.1
CDX87542	Canola	cytosol	26.32	3.96
CDY13136	Canola	cytosol	26.32	3.96
CDY22323	Canola	cytosol	26.32	3.96
CDX88342	Canola	cytosol	26.32	3.96
CDX94738	Canola	cytosol	26.32	3.96
CDY36960	Canola	cytosol	26.32	3.96
CDX79124	Canola	cytosol	24.56	3.86
CDX82904	Canola	cytosol	26.32	3.86
CDY00452	Canola	cytosol	26.32	3.85
CDX91678	Canola	cytosol	26.32	3.85
CDY05399	Canola	cytosol	24.56	3.68
CDY05455	Canola	cytosol	24.56	3.68
CDX86557	Canola	cytosol, extracellular	5.26	2.97
CDX81190	Canola	cytosol	0.0	0.0
CDX73268	Canola	cytosol	0.0	0.0
CDX86559	Canola	extracellular	0.0	0.0

Protein Annotations

EnsemblPlants:CDY38887	EnsemblPlantsGene:GSBRNA2T00066734001	Gene3D:3.40.50.720	GO:A0A078HLW3	InterPro:NAD(P)-bd_dom_sf	PANTHER:PTHR43161
PANTHER:PTHR43161:SF8	ProteinID:CDY38887	ProteinID:CDY38887.1	SUPFAM:SSF51735	TMHMM:TMhelix	UniParc:UPI00025400E2
UniProt:A0A078HLW3	MapMan:35.1	:	:	:	:

Description

BnaA03g12920DBnaA03g12920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HLW3]

Coordinates

chrLK032434:+:194797..194970

Molecular Weight (calculated)

5984.4 Da

IEP (calculated)

6.494

GRAVY (calculated)

0.523

Length

57 amino acids

Sequence
(BLAST)

1: MCEPLSVGVH ACRRAEVGPE THVLVMGAGP IGLVTMLAAR AFGVPRIVIV DVDDNRS

Best Arabidopsis Sequence Match ( AT5G51970.1 )
(BLAST)

001: MGKGGMSQGE GSKVEEENMA AWLVGINTLK IQPFLLPSVG PHDVRVRMKA VGICGSDVHY LKTMRCADFV VKEPMVIGHE CAGIIEEVGE EVKHLVVGDR
101: VALEPGISCW RCNLCREGRY NLCPEMKFFA TPPVHGSLAN QVVHPADLCF KLPENVSLEE GAMCEPLSVG VHACRRAEVG PETNVLVMGA GPIGLVTMLA
201: ARAFSVPRIV IVDVDENRLA VAKQLGADEI VQVTTNLEDV GSEVEQIQKA MGSNIDVTFD CAGFNKTMST ALAATRCGGK VCLVGMGHGI MTVPLTPAAA
301: REVDVVGVFR YKNTWPLCLE FLTSGKIDVK PLITHRFGFS QKEVEDAFET SARGSNAIKV MFNL

Arabidopsis Description

SDHSorbitol dehydrogenase [Source:UniProtKB/Swiss-Prot;Acc:Q9FJ95]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.