CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 21417358

msms PMID: 21417358 doi

DR Demartini, R Jain, G Agrawal, JJ Thelen

Department of Biochemistry and Interdisciplinary Plant Group, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, Missouri 65211, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012788.1-P	Field mustard	plastid	99.18	99.18
CDY09763	Canola	cytosol, plastid	76.28	97.14
AT4G15440.1	Thale cress	cytosol	61.15	77.86
KRH26745	Soybean	plastid	60.74	62.66
Solyc07g049690.2.1	Tomato	plastid	57.67	59.24
PGSC0003DMT400002779	Potato	plastid	57.26	58.33
VIT_12s0059g01060.t01	Wine grape	plastid	58.08	58.32
GSMUA_Achr6P13520_001	Banana	plastid	52.56	55.63
Os02t0110200-01	Rice	plastid	50.1	50.31
TraesCS6D01G031100.2	Wheat	plastid	47.24	48.02
TraesCS6A01G027900.1	Wheat	plastid	47.24	47.73
TraesCS6B01G039500.1	Wheat	plastid	46.83	47.61
Zm00001d054067_P001	Maize	plasma membrane	47.85	46.61
OQU84187	Sorghum	plastid	46.83	45.53
HORVU6Hr1G005250.1	Barley	plastid	47.44	42.41
CDY02409	Canola	plastid	40.08	37.05
CDY23912	Canola	plastid	39.88	36.86

Protein Annotations

Gene3D:1.10.630.10	MapMan:35.1	GO:A0A078DMX7	EnsemblPlants:CDX90591	ProteinID:CDX90591	ProteinID:CDX90591.1
InterPro:Cyt_P450	InterPro:Cyt_P450_E_grp-IV	InterPro:Cyt_P450_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0004497
GO:GO:0005488	GO:GO:0005506	GO:GO:0008150	GO:GO:0008152	GO:GO:0016705	GO:GO:0020037
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00151228001	InterPro:IPR036396	PFAM:PF00067	PRINTS:PR00465	PANTHER:PTHR24286
PANTHER:PTHR24286:SF49	SUPFAM:SSF48264	UniParc:UPI0004EEE976	SEG:seg	:	:

Description

BnaA03g41900D

Coordinates

chrLK031863:-:987090..991518

Molecular Weight (calculated)

54498.2 Da

IEP (calculated)

6.193

GRAVY (calculated)

-0.136

Length

489 amino acids

Sequence
(BLAST)

001: MASASLPPPP PSSTSLTSQQ SSPPPSQLPI RKMPGSYGLP LVGPLSDRLD YFWFQGPDKF FKSRSEKYKS TVFRTNIPPS FPFLGNVNPN IVAVLDVKSF
101: SYLFDMDLVD KRDVLIGDFR PSLDFYGGIR VGVYLDTTEP KHAKAKSFAM EILKRSSEVW LRELLSNLDT FWETVESDIS KNDDGASYLI GLQRCIFNFL
201: STALTGANPS VSPDIAENGW KMLDKWLAIQ VIPTTKIGIL QPLEEIFLHS WAYPFFLVAG DYQKLYNFIS ENAGDVIRLG DEEYGLSRDE TVHNLLFVLG
301: FNAFGGFSVF LPSLIGRIAG DTSGLQERLR TEVRKVCGSG SGLNFRTVNE MELVKSVVYE TLRLNPPVPL QYARARDNFK ISSHDAVYEV KKGELLCGYQ
401: PLVMRDANIF EDPEEFKPDR FVGQTGSKLL NYLFWSNGPQ TGTPSVSNKQ CAAKDMVTIT AALIIANLFL RYDKITGDAG SIKTVVKAT

Best Arabidopsis Sequence Match ( AT4G15440.1 )
(BLAST)

001: MDLVDKRDVL IGDFRPSLGF YGGVRVGVYL DTTEPKHAKI KGFAMETLKR SSKVWLQELR SNLNIFWGTI ESEISKNGAA SYIFPLQRCI FSFLCASLAG
101: VDASVSPDIA ENGWKTINTW LALQVIPTAK LGVVPQPLEE ILLHTWPYPS LLIAGNYKKL YNFIDENAGD CLRLGQEEFG LTRDEAIQNL LFVLGFNAYG
201: GFSVFLPSLI GRITGDNSGL QERIRTEVRR VCGSGSDLNF KTVNEMELVK SVVYETLRFS PPVPLQFARA RKDFQISSHD AVFEVKKGEL LCGYQPLVMR
301: DANVFDEPEE FKPDRYVGET GSELLNYLYW SNGPQTGTPS ASNKQCAAKD IVTLTASLLV ADLFLRYDTI TGDSGSIKAV VKAK

Arabidopsis Description

CYP74B2Probable inactive linolenate hydroperoxide lyase [Source:UniProtKB/Swiss-Prot;Acc:B3LF83]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.