Factsheet for Solyc07g049690.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
plastid: 26371478
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400002779	Potato	plastid	96.43	95.62
VIT_12s0059g01060.t01	Wine grape	plastid	64.29	62.83
KRH26745	Soybean	plastid	61.97	62.24
CDX90591	Canola	plastid	59.24	57.67
Bra012788.1-P	Field mustard	plastid	58.82	57.26
GSMUA_Achr6P13520_001	Banana	plastid	55.46	57.14
CDY09763	Canola	cytosol, plastid	45.59	56.51
AT4G15440.1	Thale cress	cytosol	44.54	55.21
Os02t0110200-01	Rice	plastid	48.95	47.84
TraesCS6D01G031100.2	Wheat	plastid	46.64	46.15
TraesCS6B01G039500.1	Wheat	plastid	46.01	45.53
TraesCS6A01G027900.1	Wheat	plastid	46.22	45.45
OQU84187	Sorghum	plastid	46.43	43.94
Zm00001d054067_P001	Maize	plasma membrane	46.22	43.82
HORVU6Hr1G005250.1	Barley	plastid	45.8	39.85
Solyc04g079730.1.1	Tomato	plastid	39.71	35.39
Solyc01g109160.2.1	Tomato	cytosol	36.13	35.25
Solyc11g069800.1.1	Tomato	plastid	37.6	35.1
Solyc10g007960.1.1	Tomato	cytosol	35.08	34.01
Solyc01g109150.2.1	Tomato	cytosol	35.08	33.81
Solyc01g109140.2.1	Tomato	nucleus	33.4	33.26

Protein Annotations

Gene3D:1.10.630.10	MapMan:35.1	EMBL:AF230372	EMBL:AY028373	ncoils:Coil	InterPro:Cyt_P450
InterPro:Cyt_P450_E_grp-IV	InterPro:Cyt_P450_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0004497	GO:GO:0005488
GO:GO:0005506	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629
GO:GO:0006631	GO:GO:0006633	GO:GO:0006950	GO:GO:0006952	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009507	GO:GO:0009527	GO:GO:0009536	GO:GO:0009707	GO:GO:0009941
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016125	GO:GO:0016705	GO:GO:0016829
GO:GO:0020037	GO:GO:0031408	GO:GO:0046872	GO:GO:0055114	InterPro:IPR036396	UniProt:K4CF70
PFAM:PF00067	PRINTS:PR00465	PANTHER:PTHR24286	PANTHER:PTHR24286:SF49	SUPFAM:SSF48264	EnsemblPlantsGene:Solyc07g049690.2
EnsemblPlants:Solyc07g049690.2.1	UniParc:UPI0000178899	SEG:seg	:	:	:

Description

HPLFatty acid hydroperoxide lyase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:K4CF70]

Coordinates

chr7:+:60046220..60052939

Molecular Weight (calculated)

53555.5 Da

IEP (calculated)

6.797

GRAVY (calculated)

-0.098

Length

476 amino acids

Sequence
(BLAST)

001: MNSAPLSTPA PVTLPVRSIP GSYGLPLVGP IADRLDYFWF QKPENFFTKR MEKHKSTVFR TNVPPCFPFF GSVNPNVVAV LDVKSFSHLF DMEIVEKANV
101: LVGDFMPSVV YTGDMRVCAY LDTSEPKHAQ IKNFSQDILK RGSKTWVPTL LKELDTMFTT FEADLSKSNT ASLLPALQKF LFNFFSLTIL GADPSVSPEI
201: ANSGYIFLDS WLAIQLAPTV SIGVLQPLEE ILVHSFAYPF FLVKGNYEKL VQFVKNEAKE VLSRAQTEFQ LTEQEAIHNL LFILGFNAFG GFSIFLPTLL
301: GNLGDEKNAD MQEKLRKEVR DKVGVNPENL SFESVKEMEL VQSFVYETLR LSPPVPSQYA RARKDFKLSS HDSVYEIKKG ELLCGYQPLV MKDPKVFDEP
401: EKFVLERFTK EKGKELLNYL FWSNGPQTGR PTESNKQCAA KDMVTLTASL IVAYIFQKYD SVSFSSGSLT SVKKAS

Best Arabidopsis Sequence Match ( AT4G15440.1 )
(BLAST)

001: MDLVDKRDVL IGDFRPSLGF YGGVRVGVYL DTTEPKHAKI KGFAMETLKR SSKVWLQELR SNLNIFWGTI ESEISKNGAA SYIFPLQRCI FSFLCASLAG
101: VDASVSPDIA ENGWKTINTW LALQVIPTAK LGVVPQPLEE ILLHTWPYPS LLIAGNYKKL YNFIDENAGD CLRLGQEEFG LTRDEAIQNL LFVLGFNAYG
201: GFSVFLPSLI GRITGDNSGL QERIRTEVRR VCGSGSDLNF KTVNEMELVK SVVYETLRFS PPVPLQFARA RKDFQISSHD AVFEVKKGEL LCGYQPLVMR
301: DANVFDEPEE FKPDRYVGET GSELLNYLYW SNGPQTGTPS ASNKQCAAKD IVTLTASLLV ADLFLRYDTI TGDSGSIKAV VKAK

Arabidopsis Description

CYP74B2Probable inactive linolenate hydroperoxide lyase [Source:UniProtKB/Swiss-Prot;Acc:B3LF83]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.