Factsheet for PGSC0003DMT400002779

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 17210991

gfp PMID: 17210991 doi

T Farmaki, M Sanmartín, P Jiménez, M Paneque, C Sanz, G Vancanneyt, J León, JJ Sánchez-Serrano

Centro Nacional de Biotecnología, Consejo Superior de Investigaciones Científicas, Campus de Cantoblanco, Universidad Autónoma de Madrid, Carretera de Colmenar Viejo km 15,500. 28049 Madrid, Spain. mfarmaki@certh.gr

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g049690.2.1	Tomato	plastid	95.62	96.43
VIT_12s0059g01060.t01	Wine grape	plastid	63.54	62.63
KRH26745	Soybean	plastid	61.46	62.24
CDX90591	Canola	plastid	58.33	57.26
Bra012788.1-P	Field mustard	plastid	57.92	56.85
CDY09763	Canola	cytosol, plastid	45.0	56.25
GSMUA_Achr6P13520_001	Banana	plastid	53.54	55.63
AT4G15440.1	Thale cress	cytosol	44.17	55.21
Os02t0110200-01	Rice	plastid	47.5	46.82
TraesCS6D01G031100.2	Wheat	plastid	45.62	45.53
TraesCS6B01G039500.1	Wheat	plastid	45.0	44.91
TraesCS6A01G027900.1	Wheat	plastid	45.21	44.83
Zm00001d054067_P001	Maize	plasma membrane	45.62	43.63
OQU84187	Sorghum	plastid	45.62	43.54
HORVU6Hr1G005250.1	Barley	plastid	45.0	39.49
PGSC0003DMT400002934	Potato	plastid	38.33	36.08
PGSC0003DMT400043495	Potato	plastid	39.58	35.85
PGSC0003DMT400027377	Potato	cytosol	35.42	34.62
PGSC0003DMT400064771	Potato	cytosol	33.96	34.1
PGSC0003DMT400064773	Potato	cytosol	29.58	31.21

Protein Annotations

Gene3D:1.10.630.10	MapMan:35.1	ProteinID:ACT64589	ProteinID:ACT64589.1	EMBL:AJ310520	ProteinID:CAC44040
ProteinID:CAC44040.1	ncoils:Coil	InterPro:Cyt_P450	InterPro:Cyt_P450_E_grp-IV	InterPro:Cyt_P450_sf	GO:GO:0003674
GO:GO:0003824	GO:GO:0004497	GO:GO:0005488	GO:GO:0005506	GO:GO:0008150	GO:GO:0008152
GO:GO:0016705	GO:GO:0016829	GO:GO:0020037	GO:GO:0046872	GO:GO:0055114	EMBL:GQ281583
InterPro:IPR036396	UniProt:M0ZKM5	PFAM:PF00067	EnsemblPlantsGene:PGSC0003DMG400001078	PGSC:PGSC0003DMG400001078	EnsemblPlants:PGSC0003DMT400002779
PRINTS:PR00465	PANTHER:PTHR24286	PANTHER:PTHR24286:SF49	SUPFAM:SSF48264	UniParc:UPI0002968892	SEG:seg

Description

Fatty acid hydroperoxide lyase [Source:PGSC_GENE;Acc:PGSC0003DMG400001078]

Coordinates

chr7:+:45776314..45785079

Molecular Weight (calculated)

54124.4 Da

IEP (calculated)

7.117

GRAVY (calculated)

-0.072

Length

480 amino acids

Sequence
(BLAST)

001: MIPIMSSAPL STPAPVTLPV RTIPGSYGLP LLGPIADRLD YFWFQKPENF FTKRMEKHKS TVFRTNVPPC FPFVGSVNPN VVAVLDVKSF SHLFDMEIVE
101: KANVLVGDFM PSVVYTGDMR VCAYLDTSEP KHAQIKNFSL DILKRSSKTW VPTLLKELDT IFTTFEADLS KSKEASLLPA LQKFLFNFFS LTLLGADPSV
201: SPEIANSGYI FLDSWLAIQL APTVSIGVLQ PLEEILVHSF AYPFFLVKGN YEKLVQFVKN EAKEVLNRAQ TEFQLTEQEA IHNLLFILGF NAFGGFTIFL
301: PTLLGNLGDE KNAEMQEKLR KEVRDKVGVN PENLSFESVK EMELVQSFVY ETLRLTPPVP SQYARARKDF KLSSHDSVYE IKKGELLCGY QPLVMKDPKV
401: FDEPEKFVLE RFTKEKGKEL LNYLFWSNGP QTGRPTESNK QCSAKDIVTL TASLIVAYIF QKYDSVSFSS GSLRSVKKAS

Best Arabidopsis Sequence Match ( AT4G15440.1 )
(BLAST)

001: MDLVDKRDVL IGDFRPSLGF YGGVRVGVYL DTTEPKHAKI KGFAMETLKR SSKVWLQELR SNLNIFWGTI ESEISKNGAA SYIFPLQRCI FSFLCASLAG
101: VDASVSPDIA ENGWKTINTW LALQVIPTAK LGVVPQPLEE ILLHTWPYPS LLIAGNYKKL YNFIDENAGD CLRLGQEEFG LTRDEAIQNL LFVLGFNAYG
201: GFSVFLPSLI GRITGDNSGL QERIRTEVRR VCGSGSDLNF KTVNEMELVK SVVYETLRFS PPVPLQFARA RKDFQISSHD AVFEVKKGEL LCGYQPLVMR
301: DANVFDEPEE FKPDRYVGET GSELLNYLYW SNGPQTGTPS ASNKQCAAKD IVTLTASLLV ADLFLRYDTI TGDSGSIKAV VKAK

Arabidopsis Description

CYP74B2Probable inactive linolenate hydroperoxide lyase [Source:UniProtKB/Swiss-Prot;Acc:B3LF83]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.