Factsheet for VIT_12s0059g01060.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26745	Soybean	plastid	63.86	65.61
Solyc07g049690.2.1	Tomato	plastid	62.83	64.29
PGSC0003DMT400002779	Potato	plastid	62.63	63.54
CDX90591	Canola	plastid	58.32	58.08
Bra012788.1-P	Field mustard	plastid	57.91	57.67
CDY09763	Canola	cytosol, plastid	44.76	56.77
GSMUA_Achr6P13520_001	Banana	plastid	53.18	56.06
AT4G15440.1	Thale cress	cytosol	42.92	54.43
Os02t0110200-01	Rice	plastid	48.67	48.67
TraesCS6D01G031100.2	Wheat	plastid	47.23	47.82
TraesCS6B01G039500.1	Wheat	plastid	46.2	46.78
TraesCS6A01G027900.1	Wheat	plastid	46.2	46.49
OQU84187	Sorghum	plastid	46.41	44.93
Zm00001d054067_P001	Maize	plasma membrane	46.2	44.82
HORVU6Hr1G005250.1	Barley	plastid	47.23	42.05
VIT_03s0063g01850.t01	Wine grape	plastid	38.19	38.51
VIT_03s0063g01860.t01	Wine grape	plastid	37.99	38.3
VIT_18s0001g11630.t01	Wine grape	plastid	40.86	38.27
VIT_03s0063g01820.t01	Wine grape	cytosol, nucleus, plastid	37.78	37.78
VIT_03s0063g01840.t01	Wine grape	cytosol	16.84	36.61
VIT_03s0063g01830.t01	Wine grape	plastid	36.76	31.29

Protein Annotations

Gene3D:1.10.630.10	EntrezGene:100251750	wikigene:100251750	MapMan:50.1.13	ProteinID:ACZ17394	ProteinID:ACZ17394.1
ProteinID:ADP88810	ProteinID:ADP88810.1	ProteinID:CCB51982	ProteinID:CCB51982.1	InterPro:Cyt_P450	InterPro:Cyt_P450_E_grp-IV
InterPro:Cyt_P450_sf	UniProt:F6HID6	EMBL:FJ861082	EMBL:FN595765	GO:GO:0003674	GO:GO:0003824
GO:GO:0004497	GO:GO:0005488	GO:GO:0005506	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009536	GO:GO:0009941
GO:GO:0016125	GO:GO:0016705	GO:GO:0016829	GO:GO:0020037	GO:GO:0046872	GO:GO:0055114
EMBL:HM627632	EntrezGene:HPLA	wikigene:HPLA	InterPro:IPR036396	EMBL:KX379687	PFAM:PF00067
PRINTS:PR00465	PANTHER:PTHR24286	PANTHER:PTHR24286:SF49	SUPFAM:SSF48264	TIGR:TC55722	TIGR:TC60377
UniParc:UPI00015CACDC	ArrayExpress:VIT_12s0059g01060	EnsemblPlantsGene:VIT_12s0059g01060	EnsemblPlants:VIT_12s0059g01060.t01	unigene:Vvi.854	RefSeq:XP_003633284
RefSeq:XP_003633284.1	SEG:seg	:	:	:	:

Description

Fatty acid hydroperoxide lyase 1 [Source:UniProtKB/TrEMBL;Acc:F6HID6]

Coordinates

chr12:-:5972931..5975796

Molecular Weight (calculated)

54679.6 Da

IEP (calculated)

7.218

GRAVY (calculated)

-0.066

Length

487 amino acids

Sequence
(BLAST)

001: MLSSTVMSVS PGVPTPSSLT PPSPPSSSPV RAIPGSYGWP VLGPIADRLD YFWFQGPETF FRKRIDKYKS TVFRTNVPPS FPFFVGVNPN VIAVLDCKSF
101: SFLFDMDVVE KKNVLVGDFM PSVKYTGDIR VCAYLDTAET QHARVKSFAM DILKRSSSIW ASEVVASLDT MWDTIDAGVA KSNSASYIKP LQRFIFHFLT
201: KCLVGADPAV SPEIAESGYV MLDKWVFLQL LPTISVNFLQ PLEEIFLHSF AYPFFLVKGD YRKLYDFVEQ HGQAVLQRGE TEFNLSKEET IHNLLFVLGF
301: NAFGGFTIFF PSLLSALSGK PELQAKLREE VRSKIKPGTN LTFESVKDLE LVHSVVYETL RLNPPVPLQY ARARKDFQLS SHDSVFEIKK GDLLCGFQKV
401: AMTDPKIFDD PETFVPDRFT KEKGRELLNY LFWSNGPQTG SPSDRNKQCA AKDYVTMTAV LFVTHMFQRY DSVTASGSSI TAVEKAN

Best Arabidopsis Sequence Match ( AT4G15440.1 )
(BLAST)

001: MDLVDKRDVL IGDFRPSLGF YGGVRVGVYL DTTEPKHAKI KGFAMETLKR SSKVWLQELR SNLNIFWGTI ESEISKNGAA SYIFPLQRCI FSFLCASLAG
101: VDASVSPDIA ENGWKTINTW LALQVIPTAK LGVVPQPLEE ILLHTWPYPS LLIAGNYKKL YNFIDENAGD CLRLGQEEFG LTRDEAIQNL LFVLGFNAYG
201: GFSVFLPSLI GRITGDNSGL QERIRTEVRR VCGSGSDLNF KTVNEMELVK SVVYETLRFS PPVPLQFARA RKDFQISSHD AVFEVKKGEL LCGYQPLVMR
301: DANVFDEPEE FKPDRYVGET GSELLNYLYW SNGPQTGTPS ASNKQCAAKD IVTLTASLLV ADLFLRYDTI TGDSGSIKAV VKAK

Arabidopsis Description

CYP74B2Probable inactive linolenate hydroperoxide lyase [Source:UniProtKB/Swiss-Prot;Acc:B3LF83]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.