Factsheet for VIT_18s0001g11630.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_12s0057g00690.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42650.1	VIT_12s0057g00690.t01	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15274	Soybean	cytosol	56.92	70.81
KRH61218	Soybean	nucleus, plastid	69.62	69.48
Solyc04g079730.1.1	Tomato	plastid	69.23	67.42
PGSC0003DMT400043495	Potato	plastid	68.27	66.98
PGSC0003DMT400002934	Potato	plastid	65.38	66.67
KRH05758	Soybean	nucleus, plastid	66.35	66.47
Solyc11g069800.1.1	Tomato	plastid	64.04	65.29
AT5G42650.1	Thale cress	plastid	61.92	62.16
VIT_03s0063g01850.t01	Wine grape	plastid	56.54	60.87
Bra035320.1-P	Field mustard	plastid	61.35	60.3
CDY02409	Canola	plastid	61.35	60.3
CDY23912	Canola	plastid	60.96	59.92
GSMUA_Achr4P32370_001	Banana	plastid	57.12	59.88
VIT_03s0063g01860.t01	Wine grape	plastid	55.19	59.42
VIT_03s0063g01840.t01	Wine grape	cytosol	25.38	58.93
VIT_03s0063g01820.t01	Wine grape	cytosol, nucleus, plastid	54.04	57.7
GSMUA_Achr8P02880_001	Banana	plastid	56.35	57.56
Os03t0767000-01	Rice	plastid	56.35	57.23
EER90827	Sorghum	plastid	56.35	57.23
Zm00001d013185_P001	Maize	plastid	55.96	56.95
Zm00001d034184_P001	Maize	plasma membrane, plastid	55.19	55.62
Zm00001d034186_P001	Maize	plastid	55.38	55.49
TraesCS5D01G413200.1	Wheat	plastid	53.65	54.92
HORVU5Hr1G098090.1	Barley	plastid	53.46	54.72
TraesCS5A01G403200.1	Wheat	plastid	53.08	54.33
TraesCS5B01G408000.1	Wheat	plastid	53.46	54.19
VIT_03s0063g01830.t01	Wine grape	plastid	52.5	47.73
Os02t0218700-01	Rice	extracellular, plasma membrane	43.85	45.6
TraesCS6D01G172200.1	Wheat	cytosol, plastid	40.58	42.97
Os02t0218800-01	Rice	cytosol, plasma membrane, plastid, vacuole	41.92	42.75
HORVU6Hr1G039440.1	Barley	plasma membrane	40.0	42.36
Zm00001d053586_P001	Maize	cytosol	41.15	42.04
EES04752	Sorghum	cytosol	42.31	41.9
VIT_12s0059g01060.t01	Wine grape	plastid	38.27	40.86
TraesCS6B01G213300.1	Wheat	plastid	40.0	39.92
TraesCS6A01G185100.1	Wheat	mitochondrion, plastid	40.38	39.7
KRH38153	Soybean	plastid	9.23	37.5
GSMUA_Achr2P13300_001	Banana	cytosol	53.85	22.15

Protein Annotations

Gene3D:1.10.630.10	EntrezGene:100267750	wikigene:100267750	MapMan:11.7.1.3	ProteinID:CCB45902	ProteinID:CCB45902.1
InterPro:Cyt_P450	InterPro:Cyt_P450_E_grp-IV	InterPro:Cyt_P450_sf	UniProt:F6H025	EMBL:FN595227	GO:GO:0003674
GO:GO:0003824	GO:GO:0004497	GO:GO:0005488	GO:GO:0005506	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0006950	GO:GO:0006952	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009695
GO:GO:0009941	GO:GO:0009987	GO:GO:0016020	GO:GO:0016125	GO:GO:0016705	GO:GO:0020037
GO:GO:0046872	GO:GO:0055114	InterPro:IPR036396	EntrezGene:LOC100267750	wikigene:LOC100267750	PFAM:PF00067
PRINTS:PR00465	PANTHER:PTHR24286	PANTHER:PTHR24286:SF156	SUPFAM:SSF48264	UniParc:UPI00015C823F	ArrayExpress:VIT_18s0001g11630
EnsemblPlantsGene:VIT_18s0001g11630	EnsemblPlants:VIT_18s0001g11630.t01	unigene:Vvi.12624	RefSeq:XP_002283780	RefSeq:XP_002283780.1	SEG:seg

Description

No Description!

Coordinates

chr18:-:9911196..9912972

Molecular Weight (calculated)

58098.9 Da

IEP (calculated)

8.296

GRAVY (calculated)

-0.165

Length

520 amino acids

Sequence
(BLAST)

001: MASPSLTFPS LQLQFPTHTK SSKPSNHKLI VRPIFASVSE KPSVPVSQSQ VTPPGPIRKI PGDYGLPFIG PIKDRLDYFY NQGREEFFRS RAQKHQSTVF
101: RSNMPPGPFI SSNSKVIVLL DGKSFPVLFD VSKVEKKDVF TGTFMPSTEF TGGFRVLSYL DPSEPDHTKL KRLLFFLLQS SRDRVIPEFH SCFSELSETL
201: ESELAAKGKA SFADPNDQAS FNFLARALYG TKPADTKLGT DGPGLITTWV VFQLSPILTL GLPKFIEEPL IHTFPLPAFL AKSSYQKLYD FFYDASTHVL
301: DEGEKMGISR EEACHNLLFA TCFNSFGGMK IIFPTILKWV GRGGVKLHTQ LAQEIRSVVK SNGGKVTMAS MEQMPLMKST VYEAFRIEPP VALQYGKAKQ
401: DLVIESHDSV FEVKEGEMLF GYQPFATKDP KIFERSEEFV PDRFVGEGEK LLKHVLWSNG PETENPTLGN KQCAGKDFVV LAARLFVVEL FLRYDSFDIE
501: VGTSLLGSAI NLTSLKRASF

Best Arabidopsis Sequence Match ( AT5G42650.1 )
(BLAST)

001: MASISTPFPI SLHPKTVRSK PLKFRVLTRP IKASGSETPD LTVATRTGSK DLPIRNIPGN YGLPIVGPIK DRWDYFYDQG AEEFFKSRIR KYNSTVYRVN
101: MPPGAFIAEN PQVVALLDGK SFPVLFDVDK VEKKDLFTGT YMPSTELTGG YRILSYLDPS EPKHEKLKNL LFFLLKSSRN RIFPEFQATY SELFDSLEKE
201: LSLKGKADFG GSSDGTAFNF LARAFYGTNP ADTKLKADAP GLITKWVLFN LHPLLSIGLP RVIEEPLIHT FSLPPALVKS DYQRLYEFFL ESAGEILVEA
301: DKLGISREEA THNLLFATCF NTWGGMKILF PNMVKRIGRA GHQVHNRLAE EIRSVIKSNG GELTMGAIEK MELTKSVVYE CLRFEPPVTA QYGRAKKDLV
401: IESHDAAFKV KAGEMLYGYQ PLATRDPKIF DRADEFVPER FVGEEGEKLL RHVLWSNGPE TETPTVGNKQ CAGKDFVVLV ARLFVIEIFR RYDSFDIEVG
501: TSPLGSSVNF SSLRKASF

Arabidopsis Description

CYP74AAllene oxide synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q96242]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.