Factsheet for Os02t0218700-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

nucleus 1
plastid 4
cytosol 2
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 25047395
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 25047395 doi

JY Kim, J Wu, SJ Kwon, H Oh, SE Lee, SG Kim, Y Wang, GK Agrawal, R Rakwal, KY Kang, IP Ahn, BG Kim, ST Kim

Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, South Korea.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os10t0362300-03

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42650.1	Os10t0362300-03	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0218800-01	Rice	cytosol, plasma membrane, plastid, vacuole	85.0	83.33
TraesCS6D01G172200.1	Wheat	cytosol, plastid	73.8	75.15
HORVU6Hr1G039440.1	Barley	plasma membrane	73.0	74.34
EES04752	Sorghum	cytosol	77.2	73.52
Zm00001d053586_P001	Maize	cytosol	74.8	73.48
TraesCS6B01G213300.1	Wheat	plastid	73.8	70.83
TraesCS6A01G185100.1	Wheat	mitochondrion, plastid	73.6	69.57
Os03t0225900-01	Rice	mitochondrion, plastid	47.4	49.58
KRH15274	Soybean	cytosol	39.0	46.65
Os03t0767000-01	Rice	plastid	45.6	44.53
PGSC0003DMT400002934	Potato	plastid	45.2	44.31
VIT_18s0001g11630.t01	Wine grape	plastid	45.6	43.85
Os02t0110200-01	Rice	plastid	42.6	43.74
KRH61218	Soybean	nucleus, plastid	45.0	43.19
Solyc11g069800.1.1	Tomato	plastid	44.0	43.14
AT5G42650.1	Thale cress	plastid	44.6	43.05
KRH05758	Soybean	nucleus, plastid	44.6	42.97
PGSC0003DMT400043495	Potato	plastid	44.8	42.26
Solyc04g079730.1.1	Tomato	plastid	45.0	42.13
CDY02409	Canola	plastid	43.4	41.02
Bra035320.1-P	Field mustard	plastid	43.2	40.83
CDY23912	Canola	plastid	43.2	40.83
KRH38153	Soybean	plastid	6.2	24.22

Protein Annotations

Gene3D:1.10.630.10	MapMan:11.7.1.3	EntrezGene:4328742	EMBL:AK107161	ProteinID:BAD17182.1	ProteinID:BAF08221.1
ProteinID:BAS77678.1	InterPro:Cyt_P450	InterPro:Cyt_P450_E_grp-IV	InterPro:Cyt_P450_sf	GO:GO:0003674	GO:GO:0003824
GO:GO:0004497	GO:GO:0005488	GO:GO:0005506	GO:GO:0006629	GO:GO:0006631	GO:GO:0006633
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016125	GO:GO:0016705
GO:GO:0016829	GO:GO:0020037	GO:GO:0031408	GO:GO:0046872	GO:GO:0047987	GO:GO:0055114
InterPro:IPR036396	EnsemblPlantsGene:Os02g0218700	EnsemblPlants:Os02t0218700-01	PFAM:PF00067	PRINTS:PR00465	PANTHER:PTHR24286
PANTHER:PTHR24286:SF45	UniProt:Q6Z6L1	SUPFAM:SSF48264	UniParc:UPI000035AE2F	RefSeq:XP_015624763.1	SEG:seg

Description

ALLENE OXIDE SYNTHASE 3Allene oxide synthase (CYP74A3), Fatty acid 9-/13-hydroperoxide lyase (CYP74C), Biosynthesis of jasmonic acid (JA), Plant defense (Os02t0218700-01)

Coordinates

chr2:+:6628383..6630103

Molecular Weight (calculated)

54441.6 Da

IEP (calculated)

7.015

GRAVY (calculated)

0.009

Length

500 amino acids

Sequence
(BLAST)

001: MAPPPVNSGD AAAAATGEKS KLSPSGLPIR EIPGGYGVPF FSPLRDRLDY FYFQGAEEYF RSRVARHGGA TVLRVNMPPG PFISGNPRVV ALLDARSFRV
101: LLDDSMVDKA DTLDGTYMPS RALFGGHRPL AFLDAADPRH AKIKRVVMSL AAARMHHVAP AFRAAFAAMF DAVEAGLGAA VEFNKLNMRY MLDFTCAALF
201: GGEPPSKVVG DGAVTKAMAW LAFQLHPIAS KVVKPWPLEE LLLHTFSLPP FLVRRGYADL KAYFADAAAA VLDDAEKSHT GIPRDELLDN LVFVAIFNAF
301: GGFKIFLPHI VKWLARAGPE LHAKLATEVR ATVPTGEDDG ITLAAVERMP LVKSVVWEAL RMNPPVEFQY GHARRDMVVE SHDAAYEVRK GEMLFGYQPL
401: ATRDEKVFDR AGEFVADRFV AGGAAGDRPL LEHVVWSNGP ETRAPSEGNK QCPGKDMVVA VGRLMVAELF RRYDTFAADV VEAPVEPVVT FTSLTRASSG

Best Arabidopsis Sequence Match ( AT5G42650.1 )
(BLAST)

001: MASISTPFPI SLHPKTVRSK PLKFRVLTRP IKASGSETPD LTVATRTGSK DLPIRNIPGN YGLPIVGPIK DRWDYFYDQG AEEFFKSRIR KYNSTVYRVN
101: MPPGAFIAEN PQVVALLDGK SFPVLFDVDK VEKKDLFTGT YMPSTELTGG YRILSYLDPS EPKHEKLKNL LFFLLKSSRN RIFPEFQATY SELFDSLEKE
201: LSLKGKADFG GSSDGTAFNF LARAFYGTNP ADTKLKADAP GLITKWVLFN LHPLLSIGLP RVIEEPLIHT FSLPPALVKS DYQRLYEFFL ESAGEILVEA
301: DKLGISREEA THNLLFATCF NTWGGMKILF PNMVKRIGRA GHQVHNRLAE EIRSVIKSNG GELTMGAIEK MELTKSVVYE CLRFEPPVTA QYGRAKKDLV
401: IESHDAAFKV KAGEMLYGYQ PLATRDPKIF DRADEFVPER FVGEEGEKLL RHVLWSNGPE TETPTVGNKQ CAGKDFVVLV ARLFVIEIFR RYDSFDIEVG
501: TSPLGSSVNF SSLRKASF

Arabidopsis Description

CYP74AAllene oxide synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q96242]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.