CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH14106
KRH74010

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42650.1	KRH14106	AT5G35750.1	18642946
AT5G42650.1	KRH74010	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15274	Soybean	cytosol	61.8	77.03
KRH05758	Soybean	nucleus, plastid	70.25	70.52
VIT_18s0001g11630.t01	Wine grape	plastid	69.48	69.62
PGSC0003DMT400002934	Potato	plastid	65.26	66.67
Solyc11g069800.1.1	Tomato	plastid	63.92	65.29
PGSC0003DMT400043495	Potato	plastid	65.07	63.96
Solyc04g079730.1.1	Tomato	plastid	65.45	63.86
GSMUA_Achr4P32370_001	Banana	plastid	58.93	61.9
EER90827	Sorghum	plastid	59.69	60.74
AT5G42650.1	Thale cress	plastid	60.08	60.42
Zm00001d013185_P001	Maize	plastid	58.73	59.88
CDY23912	Canola	plastid	60.46	59.55
GSMUA_Achr8P02880_001	Banana	plastid	58.16	59.53
CDY02409	Canola	plastid	60.27	59.36
Bra035320.1-P	Field mustard	plastid	60.08	59.17
Zm00001d034184_P001	Maize	plasma membrane, plastid	57.58	58.14
Os03t0767000-01	Rice	plastid	57.01	58.01
TraesCS5D01G413200.1	Wheat	plastid	56.24	57.68
Zm00001d034186_P001	Maize	plastid	57.2	57.42
TraesCS5B01G408000.1	Wheat	plastid	56.43	57.31
HORVU5Hr1G098090.1	Barley	plastid	55.85	57.28
TraesCS5A01G403200.1	Wheat	plastid	55.66	57.09
KRH29541	Soybean	endoplasmic reticulum	49.33	53.77
KRH49555	Soybean	endoplasmic reticulum	49.33	49.23
TraesCS6D01G172200.1	Wheat	cytosol, plastid	42.61	45.21
Os02t0218700-01	Rice	extracellular, plasma membrane	43.19	45.0
HORVU6Hr1G039440.1	Barley	plasma membrane	41.65	44.2
Os02t0218800-01	Rice	cytosol, plasma membrane, plastid, vacuole	42.42	43.33
TraesCS6B01G213300.1	Wheat	plastid	42.42	42.42
TraesCS6A01G185100.1	Wheat	mitochondrion, plastid	42.99	42.34
Zm00001d053586_P001	Maize	cytosol	41.27	42.24
EES04752	Sorghum	cytosol	42.42	42.1
KRH26745	Soybean	plastid	37.24	40.93
KRH38153	Soybean	plastid	9.4	38.28
GSMUA_Achr2P13300_001	Banana	cytosol	56.43	23.26

Protein Annotations

Gene3D:1.10.630.10	EntrezGene:100807192	MapMan:11.7.1.3	EMBL:ACUP02002158	InterPro:Cyt_P450	InterPro:Cyt_P450_E_grp-IV
InterPro:Cyt_P450_sf	EnsemblPlantsGene:GLYMA_04G035000	GO:GO:0003674	GO:GO:0003824	GO:GO:0004497	GO:GO:0005488
GO:GO:0005506	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629
GO:GO:0006950	GO:GO:0006952	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009695	GO:GO:0009941	GO:GO:0009987	GO:GO:0016020
GO:GO:0016125	GO:GO:0016705	GO:GO:0020037	GO:GO:0046872	GO:GO:0055114	UniProt:I1JTE7
InterPro:IPR036396	EnsemblPlants:KRH61218	ProteinID:KRH61218	ProteinID:KRH61218.1	PFAM:PF00067	PRINTS:PR00465
PANTHER:PTHR24286	PANTHER:PTHR24286:SF156	SUPFAM:SSF48264	UniParc:UPI00023C1FE5	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:+:2793125..2795315

Molecular Weight (calculated)

58473.5 Da

IEP (calculated)

9.488

GRAVY (calculated)

-0.186

Length

521 amino acids

Sequence
(BLAST)

001: MTSITSASLP LLQLQSSLKR KPCNLKSSTT MRRFTTKASA SETTSAAAPA PEPSKLPMRK IPGDYGLPFI GPIKDRLDFF YNQGRDKFFQ SRAQKYNSTV
101: FRANMPPGPF IASNPNVIVL LDAKSFPVLF DVSKVEKRDV FTGTFMPSTQ LTGGYRILSY LDPSEPRHEQ LKRLLFFLLK SRSSHVIPEF HSSYTTLFET
201: LENELAKEGK ASFQTANDQA AFNFLARALY GTNPSDTNLG RDGPSIIQTW LLFQLGPIMT LGLPKFLEDP TLHTFRIPPF LIKKDYKRLY DFFYESSGFA
301: LDEAVRLGVP REEACHNLLF ATCFNSFGGM KIFFPTILKW VGRAGVKLHA RLAEEVRAAV KSNGGKVTMA SMEEMPLMKS VVYEAFRIEP PVPLQYGRAK
401: KELVIESHEN AFVVKEGEML FGFQPFATKD PKIFENAEEF VADRFVGEGE KLLKHVLWSN GPETEGPTLG NKQCAGKDFV VLFSRLLVVE FFLHYDSFDV
501: QVGNSSLGSS LTFTSLKKAS Y

Best Arabidopsis Sequence Match ( AT5G42650.1 )
(BLAST)

001: MASISTPFPI SLHPKTVRSK PLKFRVLTRP IKASGSETPD LTVATRTGSK DLPIRNIPGN YGLPIVGPIK DRWDYFYDQG AEEFFKSRIR KYNSTVYRVN
101: MPPGAFIAEN PQVVALLDGK SFPVLFDVDK VEKKDLFTGT YMPSTELTGG YRILSYLDPS EPKHEKLKNL LFFLLKSSRN RIFPEFQATY SELFDSLEKE
201: LSLKGKADFG GSSDGTAFNF LARAFYGTNP ADTKLKADAP GLITKWVLFN LHPLLSIGLP RVIEEPLIHT FSLPPALVKS DYQRLYEFFL ESAGEILVEA
301: DKLGISREEA THNLLFATCF NTWGGMKILF PNMVKRIGRA GHQVHNRLAE EIRSVIKSNG GELTMGAIEK MELTKSVVYE CLRFEPPVTA QYGRAKKDLV
401: IESHDAAFKV KAGEMLYGYQ PLATRDPKIF DRADEFVPER FVGEEGEKLL RHVLWSNGPE TETPTVGNKQ CAGKDFVVLV ARLFVIEIFR RYDSFDIEVG
501: TSPLGSSVNF SSLRKASF

Arabidopsis Description

CYP74AAllene oxide synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q96242]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.