CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 9
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29541	Soybean	endoplasmic reticulum	61.88	67.57
VIT_03s0063g01840.t01	Wine grape	cytosol	25.67	59.82
VIT_03s0063g01820.t01	Wine grape	cytosol, nucleus, plastid	54.79	58.73
VIT_03s0063g01860.t01	Wine grape	plastid	54.02	58.39
VIT_03s0063g01850.t01	Wine grape	plastid	54.02	58.39
Os03t0225900-01	Rice	mitochondrion, plastid	49.81	54.39
GSMUA_Achr8P04830_001	Banana	cytosol	43.49	53.66
Solyc01g109160.2.1	Tomato	cytosol	48.85	52.25
KRH15274	Soybean	cytosol	41.76	52.15
Solyc01g109150.2.1	Tomato	cytosol	49.23	52.02
TraesCS4A01G061900.1	Wheat	cytosol, golgi, unclear	47.7	51.66
HORVU4Hr1G066230.1	Barley	plastid	47.32	51.46
OQU92970	Sorghum	cytosol	47.51	51.35
TraesCS4A01G061800.1	Wheat	plastid	47.13	51.25
TraesCS4D01G238800.1	Wheat	cytosol, golgi	47.32	51.24
TraesCS4B01G237600.1	Wheat	cytosol, plastid	47.32	51.24
TraesCS4D01G238700.1	Wheat	plastid	46.93	51.04
TraesCS4B01G237500.1	Wheat	plastid	46.93	51.04
HORVU4Hr1G066270.1	Barley	plasma membrane	47.32	50.72
Zm00001d048021_P001	Maize	plasma membrane	46.55	50.41
Zm00001d028282_P001	Maize	plastid	46.55	50.41
VIT_03s0063g01830.t01	Wine grape	plastid	54.98	50.17
PGSC0003DMT400027377	Potato	cytosol	47.13	50.1
Solyc10g007960.1.1	Tomato	cytosol	46.93	49.9
KRH61218	Soybean	nucleus, plastid	49.23	49.33
KRH05758	Soybean	nucleus, plastid	49.04	49.33
Solyc01g109140.2.1	Tomato	nucleus	44.25	48.33
PGSC0003DMT400064771	Potato	cytosol	44.25	48.33
PGSC0003DMT400064773	Potato	cytosol	37.93	43.52
KRH26745	Soybean	plastid	33.14	36.5
KRH38153	Soybean	plastid	8.62	35.16
GSMUA_Achr5P08810_001	Banana	cytosol	42.91	25.78

Protein Annotations

Gene3D:1.10.630.10	MapMan:11.7.1.3	EMBL:ACUP02004397	InterPro:Cyt_P450	InterPro:Cyt_P450_E_grp-IV	InterPro:Cyt_P450_sf
EnsemblPlantsGene:GLYMA_07G162900	GO:GO:0003674	GO:GO:0003824	GO:GO:0004497	GO:GO:0005488	GO:GO:0005506
GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0016125	GO:GO:0016705	GO:GO:0020037
GO:GO:0046872	GO:GO:0055114	UniProt:I1KKQ1	InterPro:IPR036396	EnsemblPlants:KRH49555	ProteinID:KRH49555
ProteinID:KRH49555.1	PFAM:PF00067	PRINTS:PR00465	PANTHER:PTHR24286	PANTHER:PTHR24286:SF76	SUPFAM:SSF48264
UniParc:UPI0002969ADE	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:21561545..21566624

Molecular Weight (calculated)

58742.6 Da

IEP (calculated)

8.750

GRAVY (calculated)

-0.200

Length

522 amino acids

Sequence
(BLAST)

001: MISLIKNKIN HLAPPTHHYS SLLLLPLSSK HTSSTMAAPS SETKSPSSSN TQLPLKPIPG SYGMPFFGAI SDRHNYFYHQ GRDKFFATRI EKHNSTVIRT
101: NMPPGPFISS DPRVVALLDG ASFPILFDND KVEKLNVLDG TFMPSTKFTG GFRVCAYLDT TEPNHALIKQ FFLNVLAKRK DSFVPLFRNC LQESFAEIED
201: QLSKNTKADF NTVFSDASFN FMFRLFCDGK DPSQTNLGSK GPKLVDTWLL FQLAPLATLG LPKIFNYIED FLIRTLPFPA CLTKSGYKNL YEAFKTHATT
301: ALDEAEKLGL KRNEACHNVV FTAGFNAYGG LKNQFPYVLK WLGLSGEKLH ADLAREVRRV VNDEGGVTFT ALENMPLVKS VVYEVMRIEP AVPYQYARAR
401: ENLVVSSHDA SFEVKKGEML FGYQPFATRD PRIFEDAEVF VPRRFVGEGE KMLKHVLWSN GRETEEPSAS NKQCPGKNLV VLLCRLFLVE LFLRYDTFEF
501: EYTQAGFGPT ITIKSLTKAS TI

Best Arabidopsis Sequence Match ( AT5G42650.1 )
(BLAST)

001: MASISTPFPI SLHPKTVRSK PLKFRVLTRP IKASGSETPD LTVATRTGSK DLPIRNIPGN YGLPIVGPIK DRWDYFYDQG AEEFFKSRIR KYNSTVYRVN
101: MPPGAFIAEN PQVVALLDGK SFPVLFDVDK VEKKDLFTGT YMPSTELTGG YRILSYLDPS EPKHEKLKNL LFFLLKSSRN RIFPEFQATY SELFDSLEKE
201: LSLKGKADFG GSSDGTAFNF LARAFYGTNP ADTKLKADAP GLITKWVLFN LHPLLSIGLP RVIEEPLIHT FSLPPALVKS DYQRLYEFFL ESAGEILVEA
301: DKLGISREEA THNLLFATCF NTWGGMKILF PNMVKRIGRA GHQVHNRLAE EIRSVIKSNG GELTMGAIEK MELTKSVVYE CLRFEPPVTA QYGRAKKDLV
401: IESHDAAFKV KAGEMLYGYQ PLATRDPKIF DRADEFVPER FVGEEGEKLL RHVLWSNGPE TETPTVGNKQ CAGKDFVVLV ARLFVIEIFR RYDSFDIEVG
501: TSPLGSSVNF SSLRKASF

Arabidopsis Description

CYP74AAllene oxide synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q96242]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.