CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH14106
KRH74010

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42650.1	KRH14106	AT5G35750.1	18642946
AT5G42650.1	KRH74010	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15274	Soybean	cytosol	76.11	94.5
KRH61218	Soybean	nucleus, plastid	70.52	70.25
PGSC0003DMT400002934	Potato	plastid	65.7	66.86
Solyc11g069800.1.1	Tomato	plastid	65.32	66.47
VIT_18s0001g11630.t01	Wine grape	plastid	66.47	66.35
PGSC0003DMT400043495	Potato	plastid	67.05	65.66
Solyc04g079730.1.1	Tomato	plastid	66.86	64.98
GSMUA_Achr4P32370_001	Banana	plastid	60.5	63.31
AT5G42650.1	Thale cress	plastid	61.27	61.39
GSMUA_Achr8P02880_001	Banana	plastid	59.54	60.71
CDY23912	Canola	plastid	60.89	59.74
CDY02409	Canola	plastid	60.69	59.55
Zm00001d013185_P001	Maize	plastid	58.57	59.49
EER90827	Sorghum	plastid	58.57	59.38
Bra035320.1-P	Field mustard	plastid	60.5	59.36
Os03t0767000-01	Rice	plastid	58.0	58.79
Zm00001d034186_P001	Maize	plastid	58.38	58.38
TraesCS5D01G413200.1	Wheat	plastid	57.03	58.27
HORVU5Hr1G098090.1	Barley	plastid	56.84	58.07
Zm00001d034184_P001	Maize	plasma membrane, plastid	57.42	57.75
TraesCS5A01G403200.1	Wheat	plastid	56.45	57.68
TraesCS5B01G408000.1	Wheat	plastid	56.84	57.5
KRH29541	Soybean	endoplasmic reticulum	47.21	51.26
KRH49555	Soybean	endoplasmic reticulum	49.33	49.04
TraesCS6D01G172200.1	Wheat	cytosol, plastid	43.55	46.03
HORVU6Hr1G039440.1	Barley	plasma membrane	42.58	45.01
Os02t0218700-01	Rice	extracellular, plasma membrane	42.97	44.6
Os02t0218800-01	Rice	cytosol, plasma membrane, plastid, vacuole	43.35	44.12
TraesCS6B01G213300.1	Wheat	plastid	44.12	43.95
TraesCS6A01G185100.1	Wheat	mitochondrion, plastid	44.51	43.67
Zm00001d053586_P001	Maize	cytosol	42.2	43.03
KRH38153	Soybean	plastid	10.6	42.97
EES04752	Sorghum	cytosol	43.35	42.86
KRH26745	Soybean	plastid	36.61	40.08
GSMUA_Achr2P13300_001	Banana	cytosol	56.65	23.26

Protein Annotations

Gene3D:1.10.630.10	EntrezGene:100037482	MapMan:11.7.1.3	UniProt:A0MAV6	ProteinID:ACA79943.1	EMBL:ACUP02010781
InterPro:Cyt_P450	InterPro:Cyt_P450_E_grp-IV	InterPro:Cyt_P450_sf	EMBL:DQ288261	EnsemblPlantsGene:GLYMA_17G246500	GO:GO:0003674
GO:GO:0003824	GO:GO:0004497	GO:GO:0005488	GO:GO:0005506	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0006950	GO:GO:0006952	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009695
GO:GO:0009941	GO:GO:0009987	GO:GO:0016020	GO:GO:0016125	GO:GO:0016705	GO:GO:0020037
GO:GO:0046872	GO:GO:0055114	InterPro:IPR036396	EnsemblPlants:KRH05758	ProteinID:KRH05758	ProteinID:KRH05758.1
PFAM:PF00067	PRINTS:PR00465	PANTHER:PTHR24286	PANTHER:PTHR24286:SF156	SUPFAM:SSF48264	UniParc:UPI0000E6A5E4

Description

hypothetical protein

Coordinates

chr17:-:40223065..40225859

Molecular Weight (calculated)

58315.2 Da

IEP (calculated)

9.299

GRAVY (calculated)

-0.180

Length

519 amino acids

Sequence
(BLAST)

001: MASSASTTLS SPFLRLEFPS STKQRSSISI RASVSEKPPL PAVSVTSPEP SKLPIRKIPG DCGFPVIGPF KDRQDYFYKQ GRDEFFKSRI QKYQSTVFRT
101: NMPPGPFLAP DPNVVVLLDA KSFPVLFDNS KVEKKDVFTG TFMPSTELTG GYRVLSYLDP SEPKHALLKQ LMFFLLKSRR AHVISEFHAS YKELFHALEA
201: NLAEAGKASF GDANDQAAFN FLSRSLFNSN PADTKLGLDG PKIVQKWVLF QIGPILRLGL PQFLEESTIR TFRLPFSLIK KDYQRLYDFF YESSGLVLDE
301: AERLGITRDE ACHNLLFATC FNSFGGMKLF FPNVLKWIGR AGVKLHARLA EEIRSAVRSG GGEISMAAME KMPLMKSVVY EAFRIDPPVA LQFGRAKRDL
401: IIESHDHAFQ VKEGEMLFGY QPFATKDPRI FERAEEFVGD RFVGEEGEKL LKHVLWSNGP ETESPTLGNK QCAGKDFVTL VSRLFVVEFF LRYDSFEIQV
501: GTSPLGSSVT ITSLKRASF

Best Arabidopsis Sequence Match ( AT5G42650.1 )
(BLAST)

001: MASISTPFPI SLHPKTVRSK PLKFRVLTRP IKASGSETPD LTVATRTGSK DLPIRNIPGN YGLPIVGPIK DRWDYFYDQG AEEFFKSRIR KYNSTVYRVN
101: MPPGAFIAEN PQVVALLDGK SFPVLFDVDK VEKKDLFTGT YMPSTELTGG YRILSYLDPS EPKHEKLKNL LFFLLKSSRN RIFPEFQATY SELFDSLEKE
201: LSLKGKADFG GSSDGTAFNF LARAFYGTNP ADTKLKADAP GLITKWVLFN LHPLLSIGLP RVIEEPLIHT FSLPPALVKS DYQRLYEFFL ESAGEILVEA
301: DKLGISREEA THNLLFATCF NTWGGMKILF PNMVKRIGRA GHQVHNRLAE EIRSVIKSNG GELTMGAIEK MELTKSVVYE CLRFEPPVTA QYGRAKKDLV
401: IESHDAAFKV KAGEMLYGYQ PLATRDPKIF DRADEFVPER FVGEEGEKLL RHVLWSNGPE TETPTVGNKQ CAGKDFVVLV ARLFVIEIFR RYDSFDIEVG
501: TSPLGSSVNF SSLRKASF

Arabidopsis Description

CYP74AAllene oxide synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q96242]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.