Factsheet for PGSC0003DMT400002934

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400015729

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42650.1	PGSC0003DMT400015729	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g069800.1.1	Tomato	plastid	89.02	89.02
KRH15274	Soybean	cytosol	58.04	70.81
PGSC0003DMT400043495	Potato	plastid	71.76	69.06
KRH05758	Soybean	nucleus, plastid	66.86	65.7
VIT_18s0001g11630.t01	Wine grape	plastid	66.67	65.38
KRH61218	Soybean	nucleus, plastid	66.67	65.26
AT5G42650.1	Thale cress	plastid	62.35	61.39
GSMUA_Achr4P32370_001	Banana	plastid	57.84	59.48
EER90827	Sorghum	plastid	58.24	58.01
Zm00001d013185_P001	Maize	plastid	58.04	57.93
CDY02409	Canola	plastid	60.0	57.84
CDY23912	Canola	plastid	59.8	57.66
Bra035320.1-P	Field mustard	plastid	59.61	57.47
Zm00001d034184_P001	Maize	plasma membrane, plastid	57.25	56.59
Zm00001d034186_P001	Maize	plastid	57.06	56.07
Os03t0767000-01	Rice	plastid	56.08	55.86
GSMUA_Achr8P02880_001	Banana	plastid	54.9	55.01
HORVU5Hr1G098090.1	Barley	plastid	54.31	54.53
TraesCS5D01G413200.1	Wheat	plastid	54.12	54.33
TraesCS5B01G408000.1	Wheat	plastid	54.31	54.0
TraesCS5A01G403200.1	Wheat	plastid	53.73	53.94
PGSC0003DMT400027377	Potato	cytosol	48.43	50.31
TraesCS6D01G172200.1	Wheat	cytosol, plastid	44.31	46.03
HORVU6Hr1G039440.1	Barley	plasma membrane	44.12	45.82
Os02t0218700-01	Rice	extracellular, plasma membrane	44.31	45.2
PGSC0003DMT400064771	Potato	cytosol	41.96	44.77
Os02t0218800-01	Rice	cytosol, plasma membrane, plastid, vacuole	44.31	44.31
TraesCS6B01G213300.1	Wheat	plastid	44.31	43.38
PGSC0003DMT400064773	Potato	cytosol	38.63	43.3
TraesCS6A01G185100.1	Wheat	mitochondrion, plastid	44.71	43.1
Zm00001d053586_P001	Maize	cytosol	42.94	43.03
EES04752	Sorghum	cytosol	43.14	41.9
PGSC0003DMT400002779	Potato	plastid	36.08	38.33
KRH38153	Soybean	plastid	8.82	35.16
GSMUA_Achr2P13300_001	Banana	cytosol	53.92	21.76

Protein Annotations

Gene3D:1.10.630.10	EntrezGene:102577479	MapMan:11.7.1.3	ProteinID:AAN37417	ProteinID:AAN37417.1	ProteinID:ABD15172
ProteinID:ABD15172.1	ProteinID:ABD15173	ProteinID:ABD15173.1	ProteinID:ABD15174	ProteinID:ABD15174.1	ProteinID:ABD15175
ProteinID:ABD15175.1	ProteinID:ABD15176	ProteinID:ABD15176.1	EMBL:AJ457081	EMBL:AY135640	ProteinID:CAD29736
ProteinID:CAD29736.2	InterPro:Cyt_P450	InterPro:Cyt_P450_E_grp-IV	InterPro:Cyt_P450_sf	EMBL:DQ369735	EMBL:DQ369736
EMBL:DQ369737	EMBL:DQ369738	EMBL:DQ369739	GO:GO:0003674	GO:GO:0003824	GO:GO:0004497
GO:GO:0005488	GO:GO:0005506	GO:GO:0008150	GO:GO:0008152	GO:GO:0016705	GO:GO:0016829
GO:GO:0020037	GO:GO:0046872	GO:GO:0047987	GO:GO:0055114	InterPro:IPR036396	UniProt:M0ZKX2
PFAM:PF00067	EnsemblPlantsGene:PGSC0003DMG400001149	PGSC:PGSC0003DMG400001149	EnsemblPlants:PGSC0003DMT400002934	PRINTS:PR00465	PANTHER:PTHR24286
PANTHER:PTHR24286:SF50	SUPFAM:SSF48264	UniParc:UPI000294A6AB	RefSeq:XP_006340212.1	SEG:seg	:

Description

Allene oxide synthase 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400001149]

Coordinates

chr11:+:41831952..41833781

Molecular Weight (calculated)

57423.5 Da

IEP (calculated)

9.161

GRAVY (calculated)

-0.183

Length

510 amino acids

Sequence
(BLAST)

001: MALTSSFSLP LPSLHQQFPS KYSTFRPIIV SLSEKPTIVV TQPTKLPTRT IPGDYGLPGI GPWKDRLDYF YNQGKDEFFE SRVVKYKSTI FRTNMPPGPF
101: ISSNPKVIVL LDGKSFPVLF DVSKVEKKDL FTGTYMPSTE LTGGYRVLSY LDPSEPNHEK LKKLMFFLLS SRRDHVIPKF HETYTEFFET LDKEMAEKGT
201: AGLNSGNDQA AFNFLARSLF GVNPVETKLG TDGPTLIGKW VLLQLHPVLT LGLPKFLDDL ILHTFRLPPF LVKKDYQRLY DFFYTNSASL FAEAEKLGIS
301: KEEACHNLLF ATCFNSFGGM KIFFPNMLKS IAKAGVEVHT RLANEIRSEV KSAGGKITMS AMEKMPLMKS VVYEALRVDP PVASQYGRAK QDLKIESHDA
401: VFEVKKGEML FGYQPFATKD PKIFDRPEEF VADRFVGEEG EKLLKYVLWS NGPETESPTV GNKQCAGKDF VVMVSRLFVT EFFLRYDTFN VDVGKSALGA
501: SITITSLKKA

Best Arabidopsis Sequence Match ( AT5G42650.1 )
(BLAST)

001: MASISTPFPI SLHPKTVRSK PLKFRVLTRP IKASGSETPD LTVATRTGSK DLPIRNIPGN YGLPIVGPIK DRWDYFYDQG AEEFFKSRIR KYNSTVYRVN
101: MPPGAFIAEN PQVVALLDGK SFPVLFDVDK VEKKDLFTGT YMPSTELTGG YRILSYLDPS EPKHEKLKNL LFFLLKSSRN RIFPEFQATY SELFDSLEKE
201: LSLKGKADFG GSSDGTAFNF LARAFYGTNP ADTKLKADAP GLITKWVLFN LHPLLSIGLP RVIEEPLIHT FSLPPALVKS DYQRLYEFFL ESAGEILVEA
301: DKLGISREEA THNLLFATCF NTWGGMKILF PNMVKRIGRA GHQVHNRLAE EIRSVIKSNG GELTMGAIEK MELTKSVVYE CLRFEPPVTA QYGRAKKDLV
401: IESHDAAFKV KAGEMLYGYQ PLATRDPKIF DRADEFVPER FVGEEGEKLL RHVLWSNGPE TETPTVGNKQ CAGKDFVVLV ARLFVIEIFR RYDSFDIEVG
501: TSPLGSSVNF SSLRKASF

Arabidopsis Description

CYP74AAllene oxide synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q96242]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.