Factsheet for PGSC0003DMT400043495

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 17210991

gfp PMID: 17210991 doi

T Farmaki, M Sanmartín, P Jiménez, M Paneque, C Sanz, G Vancanneyt, J León, JJ Sánchez-Serrano

Centro Nacional de Biotecnología, Consejo Superior de Investigaciones Científicas, Campus de Cantoblanco, Universidad Autónoma de Madrid, Carretera de Colmenar Viejo km 15,500. 28049 Madrid, Spain. mfarmaki@certh.gr

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400015729

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42650.1	PGSC0003DMT400015729	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g079730.1.1	Tomato	plastid	90.0	89.33
KRH15274	Soybean	cytosol	57.17	72.49
PGSC0003DMT400002934	Potato	plastid	69.06	71.76
VIT_18s0001g11630.t01	Wine grape	plastid	66.98	68.27
KRH05758	Soybean	nucleus, plastid	65.66	67.05
KRH61218	Soybean	nucleus, plastid	63.96	65.07
AT5G42650.1	Thale cress	plastid	61.7	63.13
GSMUA_Achr4P32370_001	Banana	plastid	57.17	61.09
CDY02409	Canola	plastid	60.75	60.87
CDY23912	Canola	plastid	60.57	60.68
Bra035320.1-P	Field mustard	plastid	60.38	60.49
GSMUA_Achr8P02880_001	Banana	plastid	56.98	59.33
Os03t0767000-01	Rice	plastid	56.98	58.98
EER90827	Sorghum	plastid	56.79	58.79
Zm00001d013185_P001	Maize	plastid	56.23	58.32
Zm00001d034184_P001	Maize	plasma membrane, plastid	56.04	57.56
Zm00001d034186_P001	Maize	plastid	56.23	57.42
TraesCS5A01G403200.1	Wheat	plastid	54.53	56.89
TraesCS5D01G413200.1	Wheat	plastid	54.53	56.89
HORVU5Hr1G098090.1	Barley	plastid	53.96	56.3
TraesCS5B01G408000.1	Wheat	plastid	54.34	56.14
PGSC0003DMT400027377	Potato	cytosol	45.85	49.49
PGSC0003DMT400064771	Potato	cytosol	42.45	47.07
PGSC0003DMT400064773	Potato	cytosol	38.68	45.05
TraesCS6D01G172200.1	Wheat	cytosol, plastid	41.7	45.01
Os02t0218700-01	Rice	extracellular, plasma membrane	42.26	44.8
HORVU6Hr1G039440.1	Barley	plasma membrane	41.13	44.4
Os02t0218800-01	Rice	cytosol, plasma membrane, plastid, vacuole	42.08	43.73
EES04752	Sorghum	cytosol	42.08	42.48
Zm00001d053586_P001	Maize	cytosol	40.75	42.44
TraesCS6B01G213300.1	Wheat	plastid	41.51	42.23
TraesCS6A01G185100.1	Wheat	mitochondrion, plastid	42.08	42.16
KRH38153	Soybean	plastid	10.0	41.41
PGSC0003DMT400002779	Potato	plastid	35.85	39.58
GSMUA_Achr2P13300_001	Banana	cytosol	53.96	22.63

Protein Annotations

Gene3D:1.10.630.10	EntrezGene:102589003	MapMan:11.7.1.3	EMBL:AJ457080	ProteinID:CAD29735	ProteinID:CAD29735.1
InterPro:Cyt_P450	InterPro:Cyt_P450_E_grp-IV	InterPro:Cyt_P450_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0004497
GO:GO:0005488	GO:GO:0005506	GO:GO:0008150	GO:GO:0008152	GO:GO:0016705	GO:GO:0016829
GO:GO:0020037	GO:GO:0046872	GO:GO:0047987	GO:GO:0055114	InterPro:IPR036396	UniProt:M1BER1
PFAM:PF00067	EnsemblPlantsGene:PGSC0003DMG400016887	PGSC:PGSC0003DMG400016887	EnsemblPlants:PGSC0003DMT400043495	PRINTS:PR00465	PANTHER:PTHR24286
PANTHER:PTHR24286:SF156	SUPFAM:SSF48264	UniParc:UPI0002950A42	RefSeq:XP_006366441.1	SEG:seg	:

Description

Allene oxide synthase [Source:PGSC_GENE;Acc:PGSC0003DMG400016887]

Coordinates

chr4:-:69089200..69091235

Molecular Weight (calculated)

59608.8 Da

IEP (calculated)

9.680

GRAVY (calculated)

-0.271

Length

530 amino acids

Sequence
(BLAST)

001: MASTSLALPS LKLQFPSHKS SSSRKNSSSH RVSIRPIQAS VSERPPYISS PSPSPSPPVK QAKLPTRKVP GDYGLPLVGP WKDRLDYFYN QGKNEFFKSR
101: IQKHQSTVFR TNMPPGPFIS FNPNVVVLLD GKSFPILFDV SKVEKKDLFT GTFMPSTDLT GGYRVLSYLD PSEPNHAKLK KLMFYLLSSR RNEVIPEFHN
201: SYSELFETLE NELSTKGKAR LNAANDQAAF NFLARSLYGI NPQDTKLGTD GPKLIGKWVL FQLHPLLILG LPKVLEDLVM HTFRLPPALV KKDYQRLYNF
301: FYENSTSVLD EAEKIGISRE EACHNLLFAT CFNSFGGIKI FFPNMLKWIG RAGAKLHSQL AQEIRSVISS NSGKVTMAAM EKMPLMKSVV YESLRIEPPV
401: ASQYGRAKHD MVIESHDASF EIKEGELLYG FQPFATKDPK IFDRSEEFVA DRFIGEEGEK LLKHVLWSNG SETENPSINN KQCAGKDFVV LVSRLLLVEL
501: FLRYDSFEIE VGASPLGAAI TLTSLRRASF

Best Arabidopsis Sequence Match ( AT5G42650.1 )
(BLAST)

001: MASISTPFPI SLHPKTVRSK PLKFRVLTRP IKASGSETPD LTVATRTGSK DLPIRNIPGN YGLPIVGPIK DRWDYFYDQG AEEFFKSRIR KYNSTVYRVN
101: MPPGAFIAEN PQVVALLDGK SFPVLFDVDK VEKKDLFTGT YMPSTELTGG YRILSYLDPS EPKHEKLKNL LFFLLKSSRN RIFPEFQATY SELFDSLEKE
201: LSLKGKADFG GSSDGTAFNF LARAFYGTNP ADTKLKADAP GLITKWVLFN LHPLLSIGLP RVIEEPLIHT FSLPPALVKS DYQRLYEFFL ESAGEILVEA
301: DKLGISREEA THNLLFATCF NTWGGMKILF PNMVKRIGRA GHQVHNRLAE EIRSVIKSNG GELTMGAIEK MELTKSVVYE CLRFEPPVTA QYGRAKKDLV
401: IESHDAAFKV KAGEMLYGYQ PLATRDPKIF DRADEFVPER FVGEEGEKLL RHVLWSNGPE TETPTVGNKQ CAGKDFVVLV ARLFVIEIFR RYDSFDIEVG
501: TSPLGSSVNF SSLRKASF

Arabidopsis Description

CYP74AAllene oxide synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q96242]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.