Factsheet for HORVU6Hr1G039440.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 3
plastid 4
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 29385242

msms PMID: 29385242 doi

K Witzel, A Matros, ALB Møller, E Ramireddy, C Finnie, M Peukert, T Rutten, A Herzog, G Kunze, M Melzer, S Kaspar-Schoenefeld, T Schmülling, B Svensson, HP Mock

Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G172200.1	Wheat	cytosol, plastid	92.06	92.06
TraesCS6B01G213300.1	Wheat	plastid	92.06	86.76
TraesCS6A01G185100.1	Wheat	mitochondrion, plastid	92.46	85.82
Os02t0218800-01	Rice	cytosol, plasma membrane, plastid, vacuole	75.97	73.14
Os02t0218700-01	Rice	extracellular, plasma membrane	74.34	73.0
EES04752	Sorghum	cytosol	74.95	70.1
Zm00001d053586_P001	Maize	cytosol	72.1	69.55
HORVU4Hr1G066230.1	Barley	plastid	47.86	48.96
HORVU4Hr1G066270.1	Barley	plasma membrane	47.45	47.84
KRH15274	Soybean	cytosol	39.51	46.41
HORVU5Hr1G098090.1	Barley	plastid	46.03	44.49
PGSC0003DMT400002934	Potato	plastid	45.82	44.12
Solyc11g069800.1.1	Tomato	plastid	45.21	43.53
KRH05758	Soybean	nucleus, plastid	45.01	42.58
KRH61218	Soybean	nucleus, plastid	44.2	41.65
AT5G42650.1	Thale cress	plastid	43.79	41.51
PGSC0003DMT400043495	Potato	plastid	44.4	41.13
Solyc04g079730.1.1	Tomato	plastid	44.4	40.82
CDY02409	Canola	plastid	43.38	40.26
CDY23912	Canola	plastid	43.18	40.08
Bra035320.1-P	Field mustard	plastid	43.18	40.08
VIT_18s0001g11630.t01	Wine grape	plastid	42.36	40.0
HORVU6Hr1G005250.1	Barley	plastid	38.7	34.73
KRH38153	Soybean	plastid	6.31	24.22

Protein Annotations

Gene3D:1.10.630.10	MapMan:11.7.1.3	InterPro:Cyt_P450	InterPro:Cyt_P450_E_grp-IV	InterPro:Cyt_P450_sf	GO:GO:0003674
GO:GO:0003824	GO:GO:0004497	GO:GO:0005488	GO:GO:0005506	GO:GO:0008150	GO:GO:0008152
GO:GO:0016705	GO:GO:0020037	GO:GO:0046872	GO:GO:0055114	EnsemblPlantsGene:HORVU6Hr1G039440	EnsemblPlants:HORVU6Hr1G039440.1
InterPro:IPR036396	UniProt:M0XRA3	PFAM:PF00067	PRINTS:PR00465	PANTHER:PTHR24286	PANTHER:PTHR24286:SF45
SUPFAM:SSF48264	UniParc:UPI000295ADE4	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrchr6H:+:204704182..204706289

Molecular Weight (calculated)

53723.4 Da

IEP (calculated)

6.923

GRAVY (calculated)

-0.073

Length

491 amino acids

Sequence
(BLAST)

001: MTSKVPNSSG SSDSAEPKLS PSGLSVREVP GGYGVPFFSP LRDRLDYYYF QGAEEYFRSR IARNGGATVL RVNMPPGPFI TANSRVVAFL DARSFSVLLD
101: DAKVDKTDTL DGTFMPSLVL FGGYRPLAFM DAADPRHAAL KRVMISLAAA RMHHVAPAFR TAFGAVFDAA DAGLSDGPVE FNKLNEHHIF DFTCSALFGG
201: TPPSKAMGDG AVTKAIKWLG VQLHPLASKI IKPWLLEDLL LHTFRLPPLL VRGDYAALTA YFADAAAGVL NDAEKAQSGI SRDELLHNLV FTAIFNAYGG
301: FKIFLPHVIK WLARAGPALH ARLASEVRAA VPNDSDITVS DVDKMPLVKS VVWEALRMNP PVEFQYGRAR QDLVVESHDA AYQVRKGEML FGYQPMATRD
401: ERVFKQAGEF VPDRFVGGEG RLLGNVVWSN GPENSEPAEG NKQCPGKDMV TAVGRLMVAE LFRRYDTFTA DVKEMPLEPV VTFTSLTTRA E

Best Arabidopsis Sequence Match ( AT4G15440.1 )
(BLAST)

001: MDLVDKRDVL IGDFRPSLGF YGGVRVGVYL DTTEPKHAKI KGFAMETLKR SSKVWLQELR SNLNIFWGTI ESEISKNGAA SYIFPLQRCI FSFLCASLAG
101: VDASVSPDIA ENGWKTINTW LALQVIPTAK LGVVPQPLEE ILLHTWPYPS LLIAGNYKKL YNFIDENAGD CLRLGQEEFG LTRDEAIQNL LFVLGFNAYG
201: GFSVFLPSLI GRITGDNSGL QERIRTEVRR VCGSGSDLNF KTVNEMELVK SVVYETLRFS PPVPLQFARA RKDFQISSHD AVFEVKKGEL LCGYQPLVMR
301: DANVFDEPEE FKPDRYVGET GSELLNYLYW SNGPQTGTPS ASNKQCAAKD IVTLTASLLV ADLFLRYDTI TGDSGSIKAV VKAK

Arabidopsis Description

CYP74B2Probable inactive linolenate hydroperoxide lyase [Source:UniProtKB/Swiss-Prot;Acc:B3LF83]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.