Factsheet for HORVU4Hr1G066270.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 3
plastid 2
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 29385242

msms PMID: 29385242 doi

K Witzel, A Matros, ALB Møller, E Ramireddy, C Finnie, M Peukert, T Rutten, A Herzog, G Kunze, M Melzer, S Kaspar-Schoenefeld, T Schmülling, B Svensson, HP Mock

Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G238800.1	Wheat	cytosol, golgi	93.63	94.61
TraesCS4B01G237600.1	Wheat	cytosol, plastid	93.63	94.61
TraesCS4A01G061900.1	Wheat	cytosol, golgi, unclear	93.43	94.4
HORVU4Hr1G066230.1	Barley	plastid	88.3	89.58
OQU92970	Sorghum	cytosol	79.88	80.54
Zm00001d048021_P001	Maize	plasma membrane	77.62	78.42
Zm00001d028282_P001	Maize	plastid	77.21	78.01
Os03t0225900-01	Rice	mitochondrion, plastid	75.77	77.2
GSMUA_Achr8P04830_001	Banana	cytosol	60.78	69.98
VIT_03s0063g01840.t01	Wine grape	cytosol	26.08	56.7
VIT_03s0063g01850.t01	Wine grape	plastid	52.98	53.42
VIT_03s0063g01860.t01	Wine grape	plastid	52.77	53.21
VIT_03s0063g01820.t01	Wine grape	cytosol, nucleus, plastid	53.18	53.18
Solyc10g007960.1.1	Tomato	cytosol	49.28	48.88
PGSC0003DMT400027377	Potato	cytosol	48.67	48.27
HORVU6Hr1G039440.1	Barley	plasma membrane	47.84	47.45
HORVU5Hr1G098090.1	Barley	plastid	49.49	47.44
Solyc01g109150.2.1	Tomato	cytosol	48.05	47.37
KRH49555	Soybean	endoplasmic reticulum	50.72	47.32
KRH29541	Soybean	endoplasmic reticulum	45.79	46.65
Solyc01g109160.2.1	Tomato	cytosol	46.2	46.11
VIT_03s0063g01830.t01	Wine grape	plastid	51.95	44.23
PGSC0003DMT400064771	Potato	cytosol	42.51	43.31
Solyc01g109140.2.1	Tomato	nucleus	42.3	43.1
PGSC0003DMT400064773	Potato	cytosol	35.93	38.46
GSMUA_Achr5P08810_001	Banana	cytosol	58.52	32.8
HORVU6Hr1G005250.1	Barley	plastid	36.14	32.18

Protein Annotations

Gene3D:1.10.630.10	MapMan:11.7.1.3	EMBL:AK356126	EMBL:AK374462	InterPro:Cyt_P450	InterPro:Cyt_P450_sf
UniProt:F2CWX3	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005506	GO:GO:0008150
GO:GO:0008152	GO:GO:0016705	GO:GO:0016829	GO:GO:0020037	GO:GO:0047987	GO:GO:0055114
EnsemblPlantsGene:HORVU4Hr1G066270	EnsemblPlants:HORVU4Hr1G066270.1	InterPro:IPR036396	PFAM:PF00067	PANTHER:PTHR24286	PANTHER:PTHR24286:SF95
SUPFAM:SSF48264	UniParc:UPI0002004B5A	SEG:seg	:	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2CWX3]

Coordinates

chrchr4H:+:551855901..551858769

Molecular Weight (calculated)

53523.7 Da

IEP (calculated)

9.212

GRAVY (calculated)

-0.015

Length

487 amino acids

Sequence
(BLAST)

001: MNQSGMARSD EGSLVPREVP GSYGLPFVSA IRDRLDFYYF QGQDKYFESR VEKYGSTVVR INVPPGPFMA RDPRVVAVLD AKSFPVLFDV TKVEKKNLFT
101: GTYMPSTSLT GGFRVCSYLD PSEPTHTKVK QLLFSLLASR KDAFIPAFRS HFSSLLATVE SQLLLSGKSN FNTLNDATSF EFIGDAYFGV LPSASDLGTT
201: GPAKAAKWLI FQLHPLVTLG LPMILEEPLL HTVHLPPFLV SGDYKALYKY FFAAATKALD TAEGLGLKRD EACHNLLFAT VFNSYGGLKV LLPGILARIA
301: DSGEKFHKKL VTEIRAAVAE AGGKVTIEAL EKMELTKSAV WEALRLDPPV KFQYGRAKAD MNIESHDAVF AVKKGEMLFG YQPCATKDPR VFGPTAREFV
401: GDRFVGKEGS KLLKYVYWSN GRETESPSVH NKQCPGKNLV VLVGRLLVVE LFLRYDTFTA KVGLDLLGTK VEFTGVTKAT SGVADAV

Best Arabidopsis Sequence Match ( AT5G42650.1 )
(BLAST)

001: MASISTPFPI SLHPKTVRSK PLKFRVLTRP IKASGSETPD LTVATRTGSK DLPIRNIPGN YGLPIVGPIK DRWDYFYDQG AEEFFKSRIR KYNSTVYRVN
101: MPPGAFIAEN PQVVALLDGK SFPVLFDVDK VEKKDLFTGT YMPSTELTGG YRILSYLDPS EPKHEKLKNL LFFLLKSSRN RIFPEFQATY SELFDSLEKE
201: LSLKGKADFG GSSDGTAFNF LARAFYGTNP ADTKLKADAP GLITKWVLFN LHPLLSIGLP RVIEEPLIHT FSLPPALVKS DYQRLYEFFL ESAGEILVEA
301: DKLGISREEA THNLLFATCF NTWGGMKILF PNMVKRIGRA GHQVHNRLAE EIRSVIKSNG GELTMGAIEK MELTKSVVYE CLRFEPPVTA QYGRAKKDLV
401: IESHDAAFKV KAGEMLYGYQ PLATRDPKIF DRADEFVPER FVGEEGEKLL RHVLWSNGPE TETPTVGNKQ CAGKDFVVLV ARLFVIEIFR RYDSFDIEVG
501: TSPLGSSVNF SSLRKASF

Arabidopsis Description

CYP74AAllene oxide synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q96242]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.