Factsheet for TraesCS4D01G238800.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G237600.1	Wheat	cytosol, plastid	98.76	98.76
TraesCS4A01G061900.1	Wheat	cytosol, golgi, unclear	97.72	97.72
HORVU4Hr1G066270.1	Barley	plasma membrane	94.61	93.63
TraesCS4D01G238700.1	Wheat	plastid	91.08	91.46
OQU92970	Sorghum	cytosol	80.91	80.75
Zm00001d048021_P001	Maize	plasma membrane	78.84	78.84
Zm00001d028282_P001	Maize	plastid	78.63	78.63
Os03t0225900-01	Rice	mitochondrion, plastid	77.8	78.45
GSMUA_Achr8P04830_001	Banana	cytosol	61.83	70.45
VIT_03s0063g01840.t01	Wine grape	cytosol	26.35	56.7
VIT_03s0063g01820.t01	Wine grape	cytosol, nucleus, plastid	53.53	52.98
VIT_03s0063g01850.t01	Wine grape	plastid	52.7	52.59
VIT_03s0063g01860.t01	Wine grape	plastid	52.7	52.59
TraesCS6D01G172200.1	Wheat	cytosol, plastid	49.38	48.47
Solyc10g007960.1.1	Tomato	cytosol	49.17	48.27
TraesCS5D01G413200.1	Wheat	plastid	50.21	47.64
KRH49555	Soybean	endoplasmic reticulum	51.24	47.32
PGSC0003DMT400027377	Potato	cytosol	47.93	47.05
Solyc01g109150.2.1	Tomato	cytosol	47.72	46.56
KRH29541	Soybean	endoplasmic reticulum	45.85	46.23
Solyc01g109160.2.1	Tomato	cytosol	46.47	45.9
VIT_03s0063g01830.t01	Wine grape	plastid	52.28	44.06
PGSC0003DMT400064771	Potato	cytosol	42.74	43.1
Solyc01g109140.2.1	Tomato	nucleus	42.53	42.89
TraesCS6D01G031100.2	Wheat	plastid	38.38	38.46
PGSC0003DMT400064773	Potato	cytosol	36.31	38.46
GSMUA_Achr5P08810_001	Banana	cytosol	59.34	32.91

Protein Annotations

EnsemblPlants:TraesCS4D01G238800.1	EnsemblPlantsGene:TraesCS4D01G238800	Gene3D:1.10.630.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005506	GO:GO:0008150	GO:GO:0008152	GO:GO:0016705	GO:GO:0020037	GO:GO:0055114
InterPro:Cyt_P450	InterPro:Cyt_P450_sf	InterPro:IPR036396	PANTHER:PTHR24286	PANTHER:PTHR24286:SF95	PFAM:PF00067
SEG:seg	SUPFAM:SSF48264	MapMan:11.7.1.3	:	:	:

Description

No Description!

Coordinates

chr4D:-:400926955..400928487

Molecular Weight (calculated)

52912.7 Da

IEP (calculated)

7.965

GRAVY (calculated)

-0.023

Length

482 amino acids

Sequence
(BLAST)

001: MAGGDEGSLV PREVPGSYGM PFVSAIRDRL DFYYFQGQDK YFESRVDKYG STVVRINVPP GPFMARDPRV VAVLDAKSFP VLFDVDKVEK KNLFTGTYMP
101: STSLTGGFRV CSYLDPSEPT HTKVKQLLFS LLASRKDAFI PAFRSHFSSL LATVESQLVL SKKSNFNTLN DATSFEFIGD AYFGVLPSAS DLGTTGPTKA
201: AKWLIFQLHP LVTLGLPMIL EEPLLHTVHL PPILVSGDYK ALYKYFYAAA TKALDTAEGL GLKRDEACHN LLFATVFNSY GGLKVLLPGI LARIAGAGEK
301: FHQKLVAEIR AAVADAGGKV TIEALEKMEL TKSAVWEALR LDPPVKFQYG RAKADMNIES HDAVFAVKKG EMLFGYQPCA TRDPRVFGST AREFVGDRFV
401: GEEGRKLLQY VYWSNGRETE SPSVDNKQCP GKNLVVLVGR LLVVELFLRY DTFTADVGVD LLGTKVEFTG VTKATSGPES AV

Best Arabidopsis Sequence Match ( AT4G15440.1 )
(BLAST)

001: MDLVDKRDVL IGDFRPSLGF YGGVRVGVYL DTTEPKHAKI KGFAMETLKR SSKVWLQELR SNLNIFWGTI ESEISKNGAA SYIFPLQRCI FSFLCASLAG
101: VDASVSPDIA ENGWKTINTW LALQVIPTAK LGVVPQPLEE ILLHTWPYPS LLIAGNYKKL YNFIDENAGD CLRLGQEEFG LTRDEAIQNL LFVLGFNAYG
201: GFSVFLPSLI GRITGDNSGL QERIRTEVRR VCGSGSDLNF KTVNEMELVK SVVYETLRFS PPVPLQFARA RKDFQISSHD AVFEVKKGEL LCGYQPLVMR
301: DANVFDEPEE FKPDRYVGET GSELLNYLYW SNGPQTGTPS ASNKQCAAKD IVTLTASLLV ADLFLRYDTI TGDSGSIKAV VKAK

Arabidopsis Description

CYP74B2Probable inactive linolenate hydroperoxide lyase [Source:UniProtKB/Swiss-Prot;Acc:B3LF83]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.