Factsheet for Solyc01g109140.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 3
plastid 2
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400064771	Potato	cytosol	97.28	97.28
VIT_03s0063g01840.t01	Wine grape	cytosol	24.9	53.12
Solyc01g109150.2.1	Tomato	cytosol	53.77	52.02
Solyc01g109160.2.1	Tomato	cytosol	51.88	50.82
VIT_03s0063g01820.t01	Wine grape	cytosol, nucleus, plastid	51.67	50.72
VIT_03s0063g01860.t01	Wine grape	plastid	51.05	50.52
VIT_03s0063g01850.t01	Wine grape	plastid	50.84	50.31
KRH29541	Soybean	endoplasmic reticulum	49.16	49.16
GSMUA_Achr8P04830_001	Banana	cytosol	41.84	47.28
Solyc10g007960.1.1	Tomato	cytosol	48.12	46.84
Os03t0225900-01	Rice	mitochondrion, plastid	45.82	45.82
Zm00001d028282_P001	Maize	plastid	45.4	45.02
OQU92970	Sorghum	cytosol	45.4	44.93
KRH49555	Soybean	endoplasmic reticulum	48.33	44.25
VIT_03s0063g01830.t01	Wine grape	plastid	52.09	43.53
Zm00001d048021_P001	Maize	plasma membrane	43.72	43.36
TraesCS4A01G061900.1	Wheat	cytosol, golgi, unclear	43.51	43.15
TraesCS4B01G237600.1	Wheat	cytosol, plastid	43.1	42.74
TraesCS4B01G237500.1	Wheat	plastid	42.89	42.71
TraesCS4A01G061800.1	Wheat	plastid	42.89	42.71
HORVU4Hr1G066230.1	Barley	plastid	42.89	42.71
TraesCS4D01G238800.1	Wheat	cytosol, golgi	42.89	42.53
HORVU4Hr1G066270.1	Barley	plasma membrane	43.1	42.3
TraesCS4D01G238700.1	Wheat	plastid	42.47	42.29
Solyc04g079730.1.1	Tomato	plastid	46.44	41.57
Solyc11g069800.1.1	Tomato	plastid	44.35	41.57
Solyc07g049690.2.1	Tomato	plastid	33.26	33.4
GSMUA_Achr5P08810_001	Banana	cytosol	43.51	23.94

Protein Annotations

Gene3D:1.10.630.10	MapMan:11.7.1.3	EMBL:AF317515	InterPro:Cyt_P450	InterPro:Cyt_P450_E_grp-IV	InterPro:Cyt_P450_sf
GO:GO:0003674	GO:GO:0003824	GO:GO:0004497	GO:GO:0005488	GO:GO:0005506	GO:GO:0006629
GO:GO:0008150	GO:GO:0008152	GO:GO:0016125	GO:GO:0016705	GO:GO:0016829	GO:GO:0020037
GO:GO:0046872	GO:GO:0055114	GO:GO:0102895	InterPro:IPR036396	PFAM:PF00067	PRINTS:PR00465
PANTHER:PTHR24286	PANTHER:PTHR24286:SF76	UniProt:Q9FPM6	SUPFAM:SSF48264	EnsemblPlantsGene:Solyc01g109140.2	EnsemblPlants:Solyc01g109140.2.1
UniParc:UPI000004B686	:	:	:	:	:

Description

DES9-divinyl ether synthase [Source:UniProtKB/Swiss-Prot;Acc:Q9FPM6]

Coordinates

chr1:+:96192624..96194463

Molecular Weight (calculated)

54192.3 Da

IEP (calculated)

8.849

GRAVY (calculated)

-0.213

Length

478 amino acids

Sequence
(BLAST)

001: MSSYSELSNL PIREIPGDYG FPIISAIKDR YDYFYNQGED AWFHNKAEKY KSTVVKINMA PGPFTSNDYK LVAFLDANSF VCMFDNSLID KTDTLGGTFK
101: PGKEYYGGYR PVAFIDTKDP NHAALKGYIL SSFAKRHNLF IPLFRNTLSD HLFNNLEKQV TEQGKADFNA LLPTMTFDFI FRLLCDQKNP SDTVLGAQGP
201: EHLRKWLFPQ LIPSLSAKKL PNIIEDMLFH NFLIPFGFIK SDYNKLVDAF SKSAVSMLDE AEKLGIKREE AVQNILFLVG INMFAGLNAF FPHLFRFVGE
301: AGASLHTQLA KEIRSVIKEE GGAITLSAIN KMSLVKSVVY ETLRLRPPVP LQYGKAKKEF MVQSHDASYK INKGQFVVGY QPMASRDPKI FANPDEFVPD
401: RFMNDGEKML KHVLWSNGRE TESPAPDNKQ CPGKDLVHLL GRLILVEFFI RYDTFTLEIT PLFRAPNVAF NTLTKASK

Best Arabidopsis Sequence Match ( AT4G15440.1 )
(BLAST)

001: MDLVDKRDVL IGDFRPSLGF YGGVRVGVYL DTTEPKHAKI KGFAMETLKR SSKVWLQELR SNLNIFWGTI ESEISKNGAA SYIFPLQRCI FSFLCASLAG
101: VDASVSPDIA ENGWKTINTW LALQVIPTAK LGVVPQPLEE ILLHTWPYPS LLIAGNYKKL YNFIDENAGD CLRLGQEEFG LTRDEAIQNL LFVLGFNAYG
201: GFSVFLPSLI GRITGDNSGL QERIRTEVRR VCGSGSDLNF KTVNEMELVK SVVYETLRFS PPVPLQFARA RKDFQISSHD AVFEVKKGEL LCGYQPLVMR
301: DANVFDEPEE FKPDRYVGET GSELLNYLYW SNGPQTGTPS ASNKQCAAKD IVTLTASLLV ADLFLRYDTI TGDSGSIKAV VKAK

Arabidopsis Description

CYP74B2Probable inactive linolenate hydroperoxide lyase [Source:UniProtKB/Swiss-Prot;Acc:B3LF83]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.