Factsheet for VIT_03s0063g01860.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
cytosol 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0063g01850.t01	Wine grape	plastid	93.37	93.37
VIT_03s0063g01840.t01	Wine grape	cytosol	36.85	79.46
VIT_03s0063g01820.t01	Wine grape	cytosol, nucleus, plastid	74.74	74.13
VIT_03s0063g01830.t01	Wine grape	plastid	76.4	64.51
KRH29541	Soybean	endoplasmic reticulum	60.87	61.51
Solyc01g109160.2.1	Tomato	cytosol	60.87	60.25
Solyc01g109150.2.1	Tomato	cytosol	60.04	58.7
Solyc10g007960.1.1	Tomato	cytosol	57.76	56.82
GSMUA_Achr8P04830_001	Banana	cytosol	49.48	56.5
PGSC0003DMT400027377	Potato	cytosol	57.14	56.21
VIT_18s0001g11630.t01	Wine grape	plastid	59.42	55.19
Os03t0225900-01	Rice	mitochondrion, plastid	53.83	54.39
Zm00001d028282_P001	Maize	plastid	54.24	54.36
OQU92970	Sorghum	cytosol	54.24	54.24
KRH49555	Soybean	endoplasmic reticulum	58.39	54.02
Zm00001d048021_P001	Maize	plasma membrane	53.42	53.53
HORVU4Hr1G066270.1	Barley	plasma membrane	53.21	52.77
HORVU4Hr1G066230.1	Barley	plastid	52.38	52.71
TraesCS4A01G061900.1	Wheat	cytosol, golgi, unclear	52.59	52.7
TraesCS4B01G237600.1	Wheat	cytosol, plastid	52.59	52.7
TraesCS4D01G238800.1	Wheat	cytosol, golgi	52.59	52.7
TraesCS4D01G238700.1	Wheat	plastid	52.17	52.5
TraesCS4B01G237500.1	Wheat	plastid	52.17	52.5
TraesCS4A01G061800.1	Wheat	plastid	52.17	52.5
PGSC0003DMT400064771	Potato	cytosol	51.35	51.88
Solyc01g109140.2.1	Tomato	nucleus	50.52	51.05
PGSC0003DMT400064773	Potato	cytosol	46.17	49.01
VIT_12s0059g01060.t01	Wine grape	plastid	38.3	37.99
GSMUA_Achr5P08810_001	Banana	cytosol	48.86	27.16

Protein Annotations

Gene3D:1.10.630.10	EntrezGene:100252012	wikigene:100252012	MapMan:11.7.1.3	ProteinID:CCB56944	ProteinID:CCB56944.1
InterPro:Cyt_P450	InterPro:Cyt_P450_E_grp-IV	InterPro:Cyt_P450_sf	UniProt:F6HQI7	EMBL:FN596006	GO:GO:0003674
GO:GO:0003824	GO:GO:0004497	GO:GO:0005488	GO:GO:0005506	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	GO:GO:0016125	GO:GO:0016705	GO:GO:0020037	GO:GO:0046872	GO:GO:0055114
InterPro:IPR036396	EntrezGene:LOC100252012	wikigene:LOC100252012	PFAM:PF00067	PRINTS:PR00465	PANTHER:PTHR24286
PANTHER:PTHR24286:SF76	SUPFAM:SSF48264	UniParc:UPI00015C85B4	ArrayExpress:VIT_03s0063g01860	EnsemblPlantsGene:VIT_03s0063g01860	EnsemblPlants:VIT_03s0063g01860.t01
unigene:Vvi.24150	RefSeq:XP_002281159	RefSeq:XP_002281159.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr3:-:5192873..5194434

Molecular Weight (calculated)

54418.5 Da

IEP (calculated)

6.803

GRAVY (calculated)

-0.117

Length

483 amino acids

Sequence
(BLAST)

001: MSSLSSSSSS SRSELPLLKI PGDYGLPFFG PIRDRFDYFY NQGQDEFFKT RMQKYHSTVF RANMPPGPFI SSDSKVVVLL DAVSFPVLFD SSKVEKRNVL
101: DGTFMPSTDL TGGYRVLAFL DPSEPKHDLL KRFSFSLLAS RHRDFIPVFR SGLPDLFTTI EDDVSSKGKA NFNNIADGMY FNFVFRLICG KDPSDAKIRS
201: EGPNIFSKWL FLQLSPLMTL GLSMLPNFIE DLLLHTFPLP PFLVKSDYNK LYKAFYESAS SVLDEGERMG INRDEACHNL VFLAGFSTFG GMKVLFPPLI
301: KWVGLAGEKL HRELADEIRT VVKAEGGVTF AALDKMALTK SVVYEALRIG PPVPFQYGKA REDMVIHSHD AAFEIKKGEM IFGYQPFATK DPKVFENPED
401: FVAHRFMGEG EKLLKYVYWS NGRETDNPTA ENKQCSGKDL VVLISKLMLV EIFLRYDTFE VESGTMVLGS AVLFKSLTKS SYT

Best Arabidopsis Sequence Match ( AT5G42650.1 )
(BLAST)

001: MASISTPFPI SLHPKTVRSK PLKFRVLTRP IKASGSETPD LTVATRTGSK DLPIRNIPGN YGLPIVGPIK DRWDYFYDQG AEEFFKSRIR KYNSTVYRVN
101: MPPGAFIAEN PQVVALLDGK SFPVLFDVDK VEKKDLFTGT YMPSTELTGG YRILSYLDPS EPKHEKLKNL LFFLLKSSRN RIFPEFQATY SELFDSLEKE
201: LSLKGKADFG GSSDGTAFNF LARAFYGTNP ADTKLKADAP GLITKWVLFN LHPLLSIGLP RVIEEPLIHT FSLPPALVKS DYQRLYEFFL ESAGEILVEA
301: DKLGISREEA THNLLFATCF NTWGGMKILF PNMVKRIGRA GHQVHNRLAE EIRSVIKSNG GELTMGAIEK MELTKSVVYE CLRFEPPVTA QYGRAKKDLV
401: IESHDAAFKV KAGEMLYGYQ PLATRDPKIF DRADEFVPER FVGEEGEKLL RHVLWSNGPE TETPTVGNKQ CAGKDFVVLV ARLFVIEIFR RYDSFDIEVG
501: TSPLGSSVNF SSLRKASF

Arabidopsis Description

CYP74AAllene oxide synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q96242]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.