CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 4
cytosol 2
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0063g01840.t01	Wine grape	cytosol	30.33	64.73
KRH49555	Soybean	endoplasmic reticulum	67.57	61.88
VIT_03s0063g01860.t01	Wine grape	plastid	61.51	60.87
VIT_03s0063g01820.t01	Wine grape	cytosol, nucleus, plastid	61.3	60.16
VIT_03s0063g01850.t01	Wine grape	plastid	60.25	59.63
Solyc01g109160.2.1	Tomato	cytosol	54.81	53.69
KRH15274	Soybean	cytosol	45.19	51.67
Solyc01g109150.2.1	Tomato	cytosol	53.35	51.62
GSMUA_Achr8P04830_001	Banana	cytosol	45.61	51.54
VIT_03s0063g01830.t01	Wine grape	plastid	61.51	51.4
Solyc10g007960.1.1	Tomato	cytosol	51.26	49.9
PGSC0003DMT400064771	Potato	cytosol	49.79	49.79
KRH61218	Soybean	nucleus, plastid	53.77	49.33
Solyc01g109140.2.1	Tomato	nucleus	49.16	49.16
PGSC0003DMT400027377	Potato	cytosol	50.42	49.08
Os03t0225900-01	Rice	mitochondrion, plastid	48.74	48.74
Zm00001d028282_P001	Maize	plastid	48.12	47.72
KRH05758	Soybean	nucleus, plastid	51.26	47.21
OQU92970	Sorghum	cytosol	47.49	47.0
Zm00001d048021_P001	Maize	plasma membrane	47.07	46.68
HORVU4Hr1G066230.1	Barley	plastid	46.44	46.25
TraesCS4A01G061900.1	Wheat	cytosol, golgi, unclear	46.44	46.06
TraesCS4A01G061800.1	Wheat	plastid	46.23	46.04
TraesCS4B01G237600.1	Wheat	cytosol, plastid	46.23	45.85
TraesCS4D01G238800.1	Wheat	cytosol, golgi	46.23	45.85
TraesCS4B01G237500.1	Wheat	plastid	46.03	45.83
HORVU4Hr1G066270.1	Barley	plasma membrane	46.65	45.79
TraesCS4D01G238700.1	Wheat	plastid	45.82	45.62
PGSC0003DMT400064773	Potato	cytosol	40.17	42.2
KRH26745	Soybean	plastid	35.77	36.08
KRH38153	Soybean	plastid	9.21	34.38
GSMUA_Achr5P08810_001	Banana	cytosol	45.82	25.2

Protein Annotations

Gene3D:1.10.630.10	MapMan:11.7.1.3	EMBL:ACUP02006806	InterPro:Cyt_P450	InterPro:Cyt_P450_sf	EnsemblPlantsGene:GLYMA_11G122700
GO:GO:0003674	GO:GO:0003824	GO:GO:0004497	GO:GO:0005488	GO:GO:0005506	GO:GO:0006629
GO:GO:0008150	GO:GO:0008152	GO:GO:0016125	GO:GO:0016705	GO:GO:0016829	GO:GO:0020037
GO:GO:0046872	GO:GO:0055114	UniProt:I1LJJ4	InterPro:IPR036396	EnsemblPlants:KRH29541	ProteinID:KRH29541
ProteinID:KRH29541.1	PFAM:PF00067	PANTHER:PTHR24286	PANTHER:PTHR24286:SF76	SUPFAM:SSF48264	UniParc:UPI000233CFB6

Description

hypothetical protein

Coordinates

chr11:-:9354319..9356396

Molecular Weight (calculated)

53575.2 Da

IEP (calculated)

6.860

GRAVY (calculated)

-0.159

Length

478 amino acids

Sequence
(BLAST)

001: MASSDSKLPL KPIPGSYGLP FFGPMSDRHD YFYNQGRDKF FAERIKKYNS TVIRTNMPPG PFISSNPRVI ALLDGVSFPI LFDNSKVDKR DVLDGTFMPS
101: TSFTGGYRAC AFQDTTEPSH ALLKRFYLNF LASKHETFLP LFRNNLSDHF SDLEDKLAGK SGKASFNSSV GSATFNFLFR LLSDKDPSET IIGSDGPSLV
201: QTWLAAQLAP LATLGLPRIF NYVEDFLIRS IPFPAWTVKS SYKKLYEGLS TAGTAILDEA ERVGIKRDEA CHNLVFMLSF NAQGGLVNQF PILIKWLGLA
301: GEGLHKQLAE EIRTVVKDEG GVSLRALDQM TLTKSVVYEV LRIEPAVPFQ YAKAREDLVV ESHDAAYEIK KGEMIFGYQP FATKDPKIFE NAEDFVAHRF
401: LGHDGEKLLR HVLWSNGPQT EEPTPDDKQC PAKNLVVLMC RLYLVEFFLR YDTFTFDFKP VVLGPDVTIK SLAKASSF

Best Arabidopsis Sequence Match ( AT5G42650.1 )
(BLAST)

001: MASISTPFPI SLHPKTVRSK PLKFRVLTRP IKASGSETPD LTVATRTGSK DLPIRNIPGN YGLPIVGPIK DRWDYFYDQG AEEFFKSRIR KYNSTVYRVN
101: MPPGAFIAEN PQVVALLDGK SFPVLFDVDK VEKKDLFTGT YMPSTELTGG YRILSYLDPS EPKHEKLKNL LFFLLKSSRN RIFPEFQATY SELFDSLEKE
201: LSLKGKADFG GSSDGTAFNF LARAFYGTNP ADTKLKADAP GLITKWVLFN LHPLLSIGLP RVIEEPLIHT FSLPPALVKS DYQRLYEFFL ESAGEILVEA
301: DKLGISREEA THNLLFATCF NTWGGMKILF PNMVKRIGRA GHQVHNRLAE EIRSVIKSNG GELTMGAIEK MELTKSVVYE CLRFEPPVTA QYGRAKKDLV
401: IESHDAAFKV KAGEMLYGYQ PLATRDPKIF DRADEFVPER FVGEEGEKLL RHVLWSNGPE TETPTVGNKQ CAGKDFVVLV ARLFVIEIFR RYDSFDIEVG
501: TSPLGSSVNF SSLRKASF

Arabidopsis Description

CYP74AAllene oxide synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q96242]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.